Array 1 311-1527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXHG01000325.1 Xanthomonas oryzae pv. oryzae strain IXO1104 contig_325, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 311 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 378 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 444 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 511 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 577 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 645 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 710 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 775 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 840 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 906 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 971 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 1037 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 1103 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 1170 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 1235 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 1300 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 1367 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 1432 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 1497 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 19 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGGCCTGTGCGCGCCGATGCTCGCTGATGCGCTGCGCGTGATCGGGCTGGTACCGCGCAGCGTGCTGATTGCGGCGCAGCTCACGACTGATCGTGCTGGGCGCACGCGCCAATACATCGGCGATGGCGCGCATCGACATCCCGGTTTCATATAAAGCACGCAGACGGTATCGTTCTGACAGGTCCAGGCGGCTGGATGACATGGGCAACTCCACTTGGCAATGAAGTCGCTCAGGTCAGGTCGCCTGGACCACTTCACAAGCGTTGGTGTTGCGAATCAGAGTTGAAGCCGCCGCCTAAATCTAGGCACAG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCTGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCCGGATCACTACTGCATTATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8023-13963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXHG01000189.1 Xanthomonas oryzae pv. oryzae strain IXO1104 contig_189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8023 31 100.0 34 ............................... TTGGCCTACCCAGCAACTTGATCACATTGATGGT 8088 31 100.0 35 ............................... CGGAACTGGCCGCTCAGAATGTTCTGCGGCACACC 8154 31 100.0 33 ............................... CTGCTTCGACCCAATTCGCATAGGCCCGGCCAC 8218 31 100.0 34 ............................... GAGATCCTCTGTTACATCCCTGCCAACATTAGAC 8283 31 100.0 35 ............................... ACGGTGACGGTGTACGTGCCCCCGGTGTTATTGAC 8349 31 100.0 36 ............................... TATGGCTTCGGCATCGTGTTCAGCAACCCGCGCAAC 8416 31 100.0 35 ............................... CAGATGCTCTGGGCCGTCATGGGTCAGGTAACGGC 8482 31 100.0 34 ............................... AGCTCACGCACGTAATCGTCTATGGGCTGTGAGA 8547 31 100.0 34 ............................... TCAAGATTGCAGATTATCCAGTAGAGGTTCGAGA 8612 31 100.0 35 ............................... TGCGATTTTCGCGGCAGGAAGTATGCAATGGGCTC 8678 31 100.0 36 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGAAG 8745 31 100.0 33 ............................... TAGAGCAACCAACCAACTAGAGGTATGTGTCAT 8809 31 100.0 33 ............................... TAAGATACAACATCGCCCAGCGCACAACGGGCG 8873 31 100.0 34 ............................... CGACGTTGTCCGGACTATGACATACGAGTCAGCG 8938 31 100.0 35 ............................... CCCTTTGGCAGGTATGTAACCTCACATGGGCGGAG 9004 31 100.0 35 ............................... ATCCGTGCAACGCTCTGAGCGCGTCTCTACGGGCT 9070 31 100.0 34 ............................... ATACACTGCTGCTCGATGGGCCCAACAGCACACA 9135 31 100.0 34 ............................... CACCAGGCTTCACCATGGCATTCGACGCTTCTAC 9200 31 100.0 34 ............................... ATTTGCAAAGAAGGTCAGCGGGTCTGTAGAAGCA 9265 31 100.0 35 ............................... ACGGCAAAGTAGTTGCGACCCTCTGCCAATGTATT 9331 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCGAGGGCGCGTGTAGA 9397 31 100.0 34 ............................... TGCCCGCTGATCTGCCTAGTGACATATACGCCAT 9462 31 100.0 34 ............................... CATGACCTTCTGTAGGTCGAGCGTCCCTGGTGCG 9527 31 100.0 36 ............................... CCACACCACGTCGCCGGGCAAGTTCGAGAAGGTGGG 9594 31 100.0 34 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGC 9659 31 100.0 35 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATG 9725 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 9792 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 9858 31 100.0 35 ............................... CTGCGCAGCACAACAAGTGCATTGCGGTCAGAGGT 9924 31 100.0 35 ............................... GTTGCCCGACTGACTGACGCCCAAGGTCTGGCCGA 9990 31 100.0 37 ............................... ATGAGCGCGCATGCGCAGATCAGCAAGCAATGCAAGC 10058 31 100.0 34 ............................... ACAGTAGCAGCAGAGTGGGTGAGACTTGAGGAAC 10123 31 100.0 34 ............................... CGGCTTACAACCCCAAGCTGGGGGCGGGCGTCCT 10188 31 100.0 36 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAAA 10255 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 10320 31 100.0 35 ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 10386 31 100.0 35 ............................... TGGCCCGTGTGTTGCGGAGGATACGTTTTTCCTCC 10452 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 10516 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 10583 31 100.0 35 ............................... ATGTAGCTGGCAAGCTGCGGAGCATCGCTCAGGAT 10649 31 100.0 34 ............................... TCGGCCACGCTGGCGCTGTCGTTGAACGTCATGT 10714 31 100.0 36 ............................... GAGCGTTGGAATCCTATGGTAATACCCCTCCACAGC 10781 31 100.0 34 ............................... GCCAACTCAATCGCCGCCCAGTCAATCGGGTTGA 10846 31 100.0 33 ............................... AGCATCTTCCTTTACCTTCAGGCCGCGGATCAG 10910 31 100.0 35 ............................... TTCCGCCACGATACTGCGTATGTCTGGACACCATC 10976 31 100.0 34 ............................... ACAAGCTGGCTGTAATAGCTGCTTCGCGCAGCAC 11041 31 100.0 34 ............................... GGGAGGGTTATATCCCTCCCAGCATCTCGCCCAC 11106 31 100.0 34 ............................... AGGGTCGATTTGGCGGGCCTGCTCTTGCTGCGCA 11171 31 100.0 37 ............................... CGCCATACAGGGGCGCTACATCATCCATGCTTGCAAT 11239 31 100.0 34 ............................... ACAGTGACCTTGCCTTGATGCGCAATCAGCTGGT 11304 31 100.0 36 ............................... TCAGGCATTCCGCCCTCTTGCCAATAAATAGGCACA 11371 31 100.0 34 ............................... TCGGCATCCCGAAGAACAAGCTGAGGCTAGAGGG 11436 31 100.0 35 ............................... CAAGAAGTTTACCTGGGCGAATGCCTGCTCGTTAC 11502 31 100.0 37 ............................... TCGACGAGCGTGCAGGCCTTGGCAATTCCTTGATGAG 11570 31 100.0 35 ............................... CAAATCTGCTGCCGGGGAATGTCAATCATCTGACC 11636 31 100.0 34 ............................... TTCCTGGGATTCCTATTCGCCATCGATGCAGCAG 11701 31 100.0 33 ............................... GAGCTCATCGAGTACGTTGTTGAGCGTGGTCTG 11765 31 100.0 34 ............................... GAAGGCGCGGGTCTCAGAGACATCGAGGGTCTTC 11830 31 100.0 34 ............................... TACGTCAACGAGCGCAAGCCGCTCGCTCCGCCAG 11895 31 100.0 34 ............................... TGCGCCTGAGGATCTGGTGCTGATGGGTCCACCA 11960 31 100.0 34 ............................... CCTGACCCCGCCGGATACCCGTCTGACCGTCCGT 12025 31 100.0 34 ............................... CAGCAATACTCGCTGCCGTTGCCTCATGGCCAGC 12090 31 100.0 35 ............................... TCCGTTGCTGCTGCAATCAGCTGGTCGAGGTCCTG 12156 31 100.0 36 ............................... CTCTAATTGTTTGGTGCTGCTATGGCACTGCTGACA 12223 31 100.0 35 ............................... AGCTGGGCAAAGCCAAGGAAGGGAGTCAAGCCGGG 12289 31 100.0 35 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACCAT 12355 31 100.0 35 ............................... CCGTCGACAAGCACGCGTCGGGCGATCTGGACGGT 12421 31 100.0 35 ............................... GTGAACAACGCTGCCATCGTTGCTGAGGGCGGCCT 12487 31 100.0 36 ............................... CACGGCTCTTTCTGGGATCAAACCACGGAATATGGG 12554 31 100.0 35 ............................... TGCTTCGTGCTGCTGTGACATGCTTGGCACAATGG 12620 31 100.0 35 ............................... AGCTCAGCCTCAACAGTGTACAGCAGGGCAGCATT 12686 31 100.0 33 ............................... CCATTCTGGTCGCGGGAATTACTCTCGTTCTCC 12750 31 100.0 34 ............................... TTACGTACGCCAGTGGGAAGAAGGCTGGGCAGGT 12815 31 100.0 35 ............................... CGATTGGGGAATCGACCGCTAGCATAGTCCATCCC 12881 31 100.0 33 ............................... AAGGATGACGAGGGTAAGGATCGGGAATACACC 12945 31 100.0 35 ............................... GAGCTATACAACACCTCGAAGACACGCAAAGCGGT 13011 31 100.0 35 ............................... CCATCGTGCGGTGTGCATTGGCATTCTCCCGATCG 13077 31 100.0 35 ............................... AGCCGACATATGACGTGAGCGCGGCGAGTGCTTTG 13143 31 100.0 35 ............................... CCCGTCGCGGCAGCGGATCCATTCAGCGTCGCGCC 13209 31 100.0 35 ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 13275 31 100.0 34 ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 13340 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 13405 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 13471 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 13537 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 13604 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 13672 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 13737 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 13803 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 13868 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 13933 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 91 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CCCTTGGTGCCTATTGTGCCGGCGAATTCAACTCTGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //