Array 1 72877-71156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACXY010000010.1 Lacticaseibacillus paracasei strain D3-5 NODE_10_length_102111_cov_166.387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 72876 36 97.2 30 ................................A... TCATCTCATGGCGTCCTGAGGGGTCCAGGC 72810 36 97.2 30 ................................A... CATCAGTCGGATATATGTTTGCACGTCTAT 72744 36 100.0 30 .................................... GTTGTTTACCTTTCATGCTGATACCTGTGT 72678 36 100.0 30 .................................... TCGATGCGATACTGATGGTTGCGCCTTGGA 72612 36 100.0 30 .................................... AATTCAAAATGGTGGAAGGAAACGACTTAG 72546 36 100.0 30 .................................... AGAATAGACTTCGAGGTATGCAGATCAATG 72480 36 100.0 30 .................................... TTACAAAATTGTTGAACTGCGCCAAGTTCT 72414 36 100.0 30 .................................... AAAGACTTGCAAGGCGTTCAGCGCTTGCTG 72348 36 100.0 30 .................................... TAAAAATCAATCAAAGAACGGCGCAAAAAA 72282 36 100.0 30 .................................... GATTCTCTTCGCCAGTTCTGTGTAGCTTTC 72216 36 100.0 30 .................................... AGAACAAGTACCGATCGAAAAGGGTATTGG 72150 36 100.0 30 .................................... ACGCGGCCCGCTATCTGGTTTACAACTTCG 72084 36 100.0 30 .................................... CAGAACTGGTAACCGATCTTATCAACAAAG 72018 36 97.2 30 .............................A...... TGAAGTCATGGGGCTTTCTGACCCAAACTC 71952 36 100.0 30 .................................... ACGATGACAACCTTGAACTGTATTACTCAG 71886 36 100.0 30 .................................... ACATGAGACGAACCAACGATCAATCCGTGG 71820 36 100.0 30 .................................... GTCAGGATGATCTCGTAGTGATGCCGGTGG 71754 36 100.0 30 .................................... GAACGAAAGACAGGTGATCAGGATGGCGGT 71688 36 100.0 30 .................................... TCACAATTGTTGGCCTATTGCCGAAGTATA 71622 36 100.0 30 .................................... CCAAAATATCTGGAATATTGCGTGCCACTT 71556 36 100.0 30 .................................... TTGTTTCCGGTGTTCCGATTGAGTATTTGA 71490 36 100.0 30 .................................... AATCGCATGAGAGCGTCATTGCGGATTGTG 71424 36 100.0 30 .................................... GCTGTGTTGTCATACGTGTAACCAGTGCCA 71358 36 100.0 30 .................................... AAAATCAACTCAGAAACAGGCACATCATCA 71292 36 100.0 0 .................................... - Deletion [71257] 71256 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 71191 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 98.2 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCAATGGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGACGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGACTGAGATTTCTCTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATACATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGTATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGTACGGCAAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //