Array 1 550594-549603 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDE01000005.1 Providencia rettgeri strain APW589_S1 5_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 550593 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 550533 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 550472 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 550412 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 550352 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 550292 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 550232 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 550172 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 550112 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 550052 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 549991 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 549931 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 549871 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 549811 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 549751 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 549691 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 549631 28 89.3 0 ...T......A.........T....... | G [549605] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 561003-559231 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDE01000005.1 Providencia rettgeri strain APW589_S1 5_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 561002 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 560942 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 560881 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 560820 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 560760 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 560699 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 560639 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 560579 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 560519 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 560459 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 560399 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 560339 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 560279 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 560218 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 560158 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 560098 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 560038 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 559978 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 559918 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 559858 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 559798 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 559738 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 559678 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 559618 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 559558 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 559498 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 559438 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 559378 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 559318 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 559258 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //