Array 1 8-275 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGPP01000018.1 Pseudomonas citronellolis strain LA18T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 ............................ AGTCAGCTGGCCCTCGACCAGTTGGGACTGAC 68 28 100.0 32 ............................ CGTAGCCGAACACGTCGCCCAGGAACAGGGTT 128 28 100.0 32 ............................ TGACTCGCGCGTACTCCCTTGCTGCATCCAAG 188 28 89.3 32 ............AC.......G...... TGCGAGGGTGGACTAAATGACCGCCAAGGCCC 248 28 67.9 0 ..........A.A.......T.CTTCCC | ========== ====== ====== ====== ============================ ================================ ================== 5 28 91.4 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCGCAGTC # Right flank : CATGCCAGGCAGTCAAGCAAACCTCCATCATTCCCTTCCTCCGCATGCAGCAGTAGCATCGCGCAATCATCCCGCTTCGGCACCCGCGACCATGGACGAGTTCGCCCCTTCCGACCTGAAGACCATTCTCCATTCCAAGCGCGCCAACCTGTATTACCTCCAGCACTGCCGGGTACTGGTCAAGGGTGGCCGGGTGGAGTACGTCACCGATGAAGGCAAGCGTTCGCTGTACTGGAACATCCCTATCGCCAACACCACCTGCCTGCTGCTCGGCACCGGCACCTCGGTCACCCAGGCCGCCATGCGTGAGTTGGCCAGGGCCGGTGTCATGGTCGGCTTCTGCGGTGGAGGCGGGACGCCCCTGTTCAGCGCCAACGAGATGGAAGTGGAGGTCGCCTGGTTTCCGCCGCAGAGCGAATACCGACCTACGGAATACCTGCAGAACTGGGTTCGCTTCTGGTTCGACGACAGACTGCGCCTGGAAGCCGCCAAGGCTTTCC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9980-10966 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGPP01000018.1 Pseudomonas citronellolis strain LA18T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9980 28 100.0 32 ............................ ACGCGCAGATGTACGCCGAAGGCCGGGAGCGG 10040 28 100.0 32 ............................ TCGGCTGGCTCGGCGCGCTGATCCTTCTCCTG 10100 28 100.0 32 ............................ AGGTCGATCAGGGCCCGCTCAACGCCGTTCAG 10160 28 100.0 32 ............................ TTGGCGGCCCAGCTATACGAACAAGCCGCCAA 10220 28 100.0 32 ............................ ACAAAGGCCAATTCGTAAGCGCCAAACAAGCC 10280 28 100.0 32 ............................ CAGCAACGCGCGCAAAGTGGGCGCTGCTGATG 10340 28 100.0 32 ............................ AATGAAAACCTATACCCCCGAAGAGCTTGCCG 10400 28 100.0 32 ............................ TGGGCGACCGGGTGCAGCGGGATGACAACCAG 10460 28 100.0 32 ............................ ACGGTGATGACCTCGCTGGTCAGTTCCTGGCT 10520 28 100.0 32 ............................ AATCAGCACCAGGACCTGCAGGCTCTCGTCGC 10580 28 100.0 32 ............................ CGGTTGGGCACCGCCATGCGCACCCACAGGGA 10640 28 100.0 32 ............................ TATCCGTTTTGCCATCATGCACATGCGGCGCC 10700 28 100.0 32 ............................ TTGTAGTGAATGTCCGCGACCATGCCGGCCGG 10760 28 100.0 32 ............................ CGGCAAGCATCTGGTCTGGCCGCAGAGGGGTT 10820 28 100.0 32 ............................ CAGCCCAGCGAGGTATCCAGTACCGGCTGCCC 10880 28 100.0 32 ............................ AACCCCGAGCTGGTCAAGACGGGACTGGACCG 10940 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCGCTGGATTCGTTGATGGCTCAACCCTGGTTATCCGGCATGCGCGACCACCTGCACCTGGGCGAACTGCTGCCGGTTCCCGCGGGGGCGCAGCATCGCCAGGTCCGCCGCGTGCAGGCCAAGAGCAACCCGGAGCGCCTGCGGCGGCGGCAGATGCGCCGCCATGGCTTCAGCGAAGAAGAAGCCAGGCAACGCATTCCCGACAGCGCCGCCCGCCGGCTCGACTTGCCCTACGTCCAGTTGCGCAGTCAGAGCAGTGGGCAGAACTTTCGTCTGTTCATCCACCACGGCCCTTTGCAGAGCCAACCGGTGGCCGGGCACATCAACCGCTATGGGCTGAGCGATGGTTGTACTGTTCCCTGGTTCTGACCCTTTTTTCCGGAGCCTTCTGTACATCTTGGAAAATCAGTCACTTACAAGGGCCGTCGAAAAAAGGGATAGATGGGCTTAATGGCTGGTTTTCCTTGTAGCCACAACGACTTGGGAGCTTGAGTCTCTA # Right flank : AGCATCGCCCCCTCGGAAGAGCATTCCTGCGCGCCTCATTGCCGTACAAGCAGAGGCGCCCAGTCGCCCCCGCGCCGCCTGTTGCCTTATTCGGCATAGCCCTCGGCGATGTGCTGGTCCTTCAGCTTCACATAATTGCCAGCGGTATAGGCGAAGAAGGACCTTTCCTTGTCGCTCAGCGGGCGGGCCTTCTTCGCCGGGCTGCCGACGTAGAGGAAGCCGCTCTCCAGCACCTTGCCCGGCGGCACCAGGCTGCCGGCGCCGAGGATGACTTCGTCCTCTATTACCGCGCCGTCCATGACGATGCAGCCCATGCCCACCAGCACGCGGTTACCGACGCTGCAGCCGTGCAGCAGGACCTTGTGGCCTACGGTCACTTCGTCGCCGATGGTCAGCGGGAAGCCGTCGGGGTTGTAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGGATGCTGGTCCAGCTGCCGATGCGGATGCGGTGCATGTCGCCGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 336-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGPP01000008.1 Pseudomonas citronellolis strain LA18T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 335 28 100.0 32 ............................ TGACGAAGATGGCCCAGCGCGAGATATCGTAA 275 28 100.0 32 ............................ TTAAATTGGACGGCCTGAGCGTGCGTCATCTT 215 28 100.0 32 ............................ ACCACCAAGCCGGCGCTGTCGCCGTCCTCGGC 155 28 100.0 32 ............................ AGTCACCGACAGCCCCTGGCAATGGCCCGTTG 95 28 100.0 32 ............................ ACTGAAGAGGCCATGAACTACCTCCGCAAGGA 35 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCGCCAGCAACTCGCCGACGCCATCGAACACCCGGTTCTCGTACAACCCGGTGTCCTTGAAACGCACCCGGTAATGGTTCACCGCCTCCCAGGCCCGCGCCTCGTCGAAGCCATAGGTGCTCATGAAGCACTGCAGCAGCGGCGGACCGATGAAGTGCTCGAGCCGGCGCAGGTCCGGCTCGTCGATGCCCAGCTGCGCCAGGGCGTACTGGATCGAACGGGTGATGCCCTCGCGCGGGTCGGTAAGGGTGCCGTCCAAGTCGAAGAGAATGTTCTGGTAGTGCATGGGCGAGGCTGCGGCAGGAAGAATCGAGCCGGAAGCATACAACTGGCCTTCGTACCGACCAAACGCCCATGCAATGACTTCCTGCCCTTTTTCTGGAGCCTCTTGCGAGCCCCATGAAAATCAATGGCTTGGAGAGGCACCTGAAAAAAGGGTTATGCGTGTGTATAGGGTGCTTTCTCGTGGGAAGTCAGAGGGTTGAGGAGTAATATCTCTA # Right flank : ATTCCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //