Array 1 141938-141665 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQT01000020.1 Actinomadura macra NBRC 14102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 141937 29 96.6 32 ........................A.... GCCCGTCCCCGCACCGGCGCGACGCCGAGCCC 141876 29 93.1 32 ..................A...A...... CGCGAGCCCAATCTTCGCGAGGTCGGTCTCAC 141815 29 100.0 32 ............................. ACCGCCAGGCCGTCGTGCACGCTGTAGACCGG 141754 29 96.6 32 ....................A........ GTCTACGACGCCCAGGGCAAATTCATCGGAAT 141693 29 93.1 0 ...........A.G............... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACCGGCGGGCTGGTCTGCTGCCCGGCCCCGACCGGCACCTTGGTCGGAGGGAACCACAGATCACATTGGGCCAGCTCACCGGGCTGATACGTGGTCCGCGACGCCGGATCGGGCGACCGGTACTGCGGTCGCAGCACCCGGACCCGGTCCTTGAGCACCGTCAGCGACCGTGCCCAGCCGATCCGCTCGGCGATCACCGTGGCCGGCATGTCCGGGAACTCGGCCAACAACTCCCGGATCTGTGGCTCCACCGCGTCCACGATCGACCCCTTCCCCGCCCGCCGGTACTTCGGCGGGTCATCGGCCGCCAGCGCCCGCTTGACGGTGTTCTTCGAGACGCCCAACCGCCGAGCGATCGCCTTGATCGGCATCTGCTCGGACCGGTGCAACCGGCGGATCTCCGCCCAGTCCTCCACCTTGATCACCCTCCAGAGAGTGAAGGGGGTCAGAATTCGGCCGTCGCCTGGGGGTCAGTTTTCACCCGTCGTCGACACGTAGAA # Right flank : TCTCCCGACGACGGGTAAAAAACTGAACCCCCGGCGACGGGCGGTTGCTTGGCGGTTGCGTTCGCCCTGGGCGCGGCCGACGAACCGCCAGCCGCCGCCGTCGGGGATGTTGCCCAGTTTCTTGACGTCGGCGTTGAGCGTCGCGCCGGGGTGGTCGTGCTCGTAGCGTCGGATCGGCTCGCCGGTGGCGCGGTCGATGTGCGAGAGCCGGTTGAGGCGGCAGCGGGCGAGTACGGCGTGCACGGTGGAGACAGGTAGGCCCAGCAGTCCGGCGATCTGCACCGGGCCCAGCCGCTGTTTCCAGCGCAGGTGAACGCTGGCAGTGTTTCGGTGGGCAACCCGCTTCAACATCAGACGCCGTCACTCGGCGCTGGGCCAGATAAGCCCGATCAACTACGAACAACAGTCGCCCAGGGTGGCAAGTCGCATAGCAACCGTGTCCACGGTTCAGGGGAAAGCCCCTACGGCGTAGTGGAGACCCTGTTCCCTGATGCCGTCTG # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147933-144181 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQT01000020.1 Actinomadura macra NBRC 14102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147932 29 100.0 32 ............................. CCGTATTCGCTCAGCCCAGGCGAGTCCGGAGA 147871 29 100.0 32 ............................. AGGTCGCCGCAGGGGTGCTCCGCCCGTGACCA 147810 29 100.0 32 ............................. ACAAGCCTACGGCCGGTTCGGGCTCGCCGTCT 147749 29 100.0 32 ............................. TGGAGCGTCATCGCGCGCCGCGGCCGAACGAG 147688 29 100.0 32 ............................. CATCGGCTCTGTTCGCGGCCACCCCACACGTC 147627 29 96.6 33 ............................A CATGATCGCGAGGCCTCCCGCTCGCACCATCCG 147565 29 100.0 32 ............................. TTGCACTGGTTGATAGAGGTGACCGGCGCAGA 147504 29 100.0 32 ............................. TACCTCGCCGGCCTGTGCCTGTCGGCTGCCGA 147443 29 100.0 32 ............................. GCCCCGCGCCGGGGGATGCGGGGCGTCTCGTC 147382 27 93.1 32 ........--................... TCGGCAAGACGATCGAGCGGGCCGCAGCCGAA 147323 29 100.0 32 ............................. TGGCCTAGCGGAGTGGCCTCGTCGACCTTGGT 147262 29 100.0 33 ............................. TGCCACCCGAGACCCGAGACCCAGCGCGCGTCT 147200 29 100.0 32 ............................. GACCGGTGTCGACCACGTGCCCGATGCGGATC 147139 29 96.6 32 ............................T GGCGTATGACGTGACGGGGGAGTGGCATAAGG 147078 29 96.6 32 ............................T CCGGCGTTCAGCCAGTCCTGCACGGTCCGCTG 147017 29 100.0 32 ............................. GCGGACCGGACACGGCGCGGACCCGGGGCCCG 146956 29 96.6 33 ............................A CGGCAGGAACCCCATCAGCAACCCCAACATCGC 146894 29 100.0 32 ............................. TGGCTCAGCGACACCGTCGTGGGCACGTCCAC 146833 29 100.0 32 ............................. TGAGCACCTGGAACCCGGCGGTCTGGGCGTAG 146772 29 100.0 32 ............................. AGAGAGGAACGACCGGGAACACCCGGGTCACA 146711 29 100.0 32 ............................. GCCGGGGGATATGGAGACGGCAGGCAGTGAGT 146650 29 100.0 32 ............................. CACGTGAACGCGCGGTCATGCTTGCGTACGGG 146589 29 100.0 32 ............................. CTGTGGGTTCGTGAGACTCGGAAGCTGCTCGA 146528 29 100.0 32 ............................. TGACGCAACTCCTTCCTGTTCCTCTCGATGAT 146467 29 100.0 32 ............................. GCCACCGCCCAGCAGGCCAGCCAGCCCTGGCG 146406 29 100.0 32 ............................. GCCAGATCCACCGCCATGCGGCCGGCCGTGCG 146345 29 100.0 32 ............................. GGCGACCGCCTCCACCTGCGACTGCGACAGGT 146284 29 96.6 32 ............................G AGCACTACGCGGCGATGAAGGCCGGGCCCGGG 146223 29 100.0 32 ............................. AACCAGTCGTACAACGTCCCCTGCACGCTCGG 146162 29 100.0 32 ............................. GCGAACGTCGCCCCGTCCATCGTCACGAACCA 146101 29 100.0 32 ............................. GAGCCGTCACCGGCCGCCCCACCCCCGGCGGG 146040 29 100.0 32 ............................. TGAAGGAAGGACCCAGCGCGTGAGCAAGTCCA 145979 29 100.0 32 ............................. CACGCCCTGAACAAGGCCGCCTTCAGCCTCGG 145918 29 96.6 32 ............................T GATGCAGAACCAGCTCTACCGCTACATCGTTG 145857 29 100.0 32 ............................. GACACCACCGCGGGCGCCGTCCGCAAGCTCAA 145796 29 100.0 32 ............................. AAGAGCCGCGGCGATGGCTGGCCGGACGTGAT 145735 29 100.0 32 ............................. AACGAGCCCTGTCCCGTTTCCGTAGGTGCCGG 145674 29 100.0 32 ............................. CCGGTCGGAGTCGAGCCGCCTTCGACGTTGGA 145613 29 96.6 32 ............................T CCGGTCGGTTGGATGGCAGGAACGCCGTGAGG 145552 29 100.0 32 ............................. GCCGGTACTGACTTGGTATGCCCATCCAGGAG 145491 29 100.0 32 ............................. AGCGCCGGCTCGCTGCGGCGCATGTCCTGCCA 145430 29 100.0 32 ............................. GTGGCCGTCACGATGTGGAGCGCGGCGACGGG 145369 29 100.0 32 ............................. CGGCTCTACCCCACCGCCGCCCACGGCATCGG 145308 29 100.0 32 ............................. GCTGGGTCAGCGGCATGGTCGTCGAGGACGAG 145247 29 100.0 32 ............................. CTCGACAACCCCGACGCGCCTGACGCGATCTA 145186 29 100.0 33 ............................. CCGTGGCAGTTCACGGCGCTGCTCGCGTCGATG 145124 29 100.0 32 ............................. CACACCGAGACGCCGGTGGAGTTCGAGGTCGG 145063 29 100.0 32 ............................. TCGGCGTCGCCATGGCCACCGGCTCTGGCCCT 145002 29 100.0 32 ............................. CGTGCAGATCACCGCCGGTATGGCCTACGTGA 144941 29 100.0 32 ............................. TCCGCCGGGTTCCTGGTCACCATCGCCCCGGG 144880 29 100.0 32 ............................. CGCCCGATGCCACGCTGAGACGCTGTGCGTAC 144819 29 100.0 32 ............................. GACCCGCCGGAGATCGGGACGTGCAGGTACTC 144758 29 100.0 32 ............................. GGCGGCCAGGCCCCTTCAGGTGAAAGCATCAC 144697 29 96.6 32 ...............A............. TGTTTGGAAAGAAGGAGAACGCCTGATGACTG 144636 29 100.0 32 ............................. CCGACGCGGACGCGCCGCTGGATCGTGGTGTG 144575 29 100.0 32 ............................. GCCCACCGCGCACCCAGCGCCTTGAGCCGGTG 144514 29 100.0 32 ............................. ACCTCCGGCCCCTCCCACCCGGCGCCGCCACT 144453 29 100.0 32 ............................. GATCGGAGTGCCATCCTGGCTGCGCGTCAGCA 144392 29 100.0 32 ............................. CCGTACGCGCCGGATCCGAAGGTGGCGGTGTT 144331 29 93.1 32 ..............G........A..... AAGAACACGATGATGCTCGCCGCGGTGTTCCT 144270 29 100.0 32 ............................. GGAGGATTCTGGAGGTAGCTGGACGGCAAGGG 144209 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 62 29 99.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : AACTGCCCCGCCGGCCTACGCGGCTTCCTGACCCGCTGGCTCATGGAAATCGCTCCCGGCGTCTTCATCGGCGGCCCATCAGCACGCATCAGGCAAGCCCTCTGGGACGAGGTCCACCAATACGCCGACACCGGCCGAGCCCTCCTCGCCTACAGCACCAACAACGAACAAGGCTTCACCTTCGAGTCACGCGACCACAAGTGGCACCCCATCGACCACGAAGGTCTCACCCTGATCCGCCGCCCCAAAAACCAGCCCACCATCTCAGCAACCCCTTCACCGACCGGCTGGAGCAAAGCCAGCAAACGCCGCCGGTACGGCAAACGCTGACCACCAAACGCTCACCTCCCGACGCCCCCACTTCCCCATCGCCTTCATGCCGTGGCTACCCCCAACGGCCCGGCCCTGTTGCCACAAAAGGGGTTCGTGCAGCAATGTCCGATTCCAGAGAAGTACTCAAAAGCAGCCCCTGCCGCTGATAAACCCGCAGGTCAGGAAGT # Right flank : TAGGGCAGGGGATCGCCCTCCGGCTCGTAGTGTCAACGGCGGCTGAATTCTGACCCCCTGGGGACGTCTGAAAGTTGACCCCTTGATGTTGTCGTTGGTTACGAGTTGTTACTGCTGGTCGTTGGTGGTGCTGGCCGCGGGGACGCGGCCCAGGTCGCGGTTCTTGAGTCGGTAGCTGTCTCCCTTCAGGCTGATGACCTCGGCGTGGTGGACGAGACGGTCGATCATGGCTGCGGCGACGACGTCGTCGCCGAACACCTCGCCCCAGCGCCCGAACGGCTTGTTGCTGGTCACGATCAGCGAGGCGCGCTCGTAGCGGGACGAGACGAGCTGGAAGAACAGGTTGGCGGCCTCGGGCTCGAAGGGGATGTAGCCGACCTCGTCGACGATCAGGACCGGGATGCGGGCGAGCTTGGTGAGCTCGTCCTGCAACCGTCCGGCGGTGTGCGCTTGGGCCAGGCGGGCGACCCACCCGGCGGCGGTGGCGAAGCAGACACGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58730-59348 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQT01000021.1 Actinomadura macra NBRC 14102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58730 30 100.0 35 .............................. CGCGCCCATCCGCCCACCGCCATCAGACCGCCCTC 58795 30 96.7 35 ....T......................... CTGAACGGCAGCCGCGGCCAGGCCGGGCAGCAGCG 58860 30 100.0 37 .............................. CCGCAGTGCCGACGCACGGAACAGACGTGTTCATTGG 58927 30 100.0 36 .............................. CCAGCCAAGCGCCCAGACCCGGACCTCTGATGCCCG 58993 30 100.0 35 .............................. ACCTCTGGCCCAGGGTTCGGCGTCAGCACGCACGC 59058 30 96.7 35 ...........C.................. GCCGAGTACACCCGCCTCAACCAGGCGTTCGCGCA 59123 30 100.0 37 .............................. GTTGACGGAGCGGCCTTCGCCGCCCCTAGGAATCCTC 59190 30 96.7 34 ....A......................... CAGTTACAACCAGTGAGACTACACAGTTGTGCAG 59254 30 100.0 35 .............................. GTCAACCCGGACTACGTTGACTACCTGCTCGCGTA 59319 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.0 36 GTTGCGACCCCTCGCAGGGGCGATGAGGAC # Left flank : GGTGAGGATTGTCTGGTGGTTGGTGTGGTCTACCTGGCCTTTTGCCCGGTGTTTGGAGACCGCTCGTTTGACGATGCGGGGGTAGTTGCGGTCGCGGCGGGCGGGCAGGGGGTCGGCCAGGACGGCACGGCCGATGCGGCTGACCAGGTCGACGGGGGTTTGGGCGATGATCCCGGCGGCATGGACGATCTGATCGCGGGCGGCACGCAGGGCGCCAACAACACCTTGAAGGGCTCGGCCCCGACCCGGAGGCGGGCCTGCGCCAGCGCCGATGACGAGGGCACCGGCCCCTGCCCGTCCAGCCCCGCGACCAGCCGGGCCTACACCTGCCGATACCCCAACCTCTCAAACAACCCGGCCGCCAGCAGCAGATACACCACCACCCGCGGGGCAGCCCCCGGACCTGCGCCTGGGTGCGACCCGTGGACGCCAACACCTCATCGACCATCTCGAACGGCACGATCTGGGTCAGCTCACCCAGATGACCCGACCCGCGCCAT # Right flank : TCCAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCCCTCGCAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1197-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQT01000032.1 Actinomadura macra NBRC 14102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1196 30 100.0 38 .............................. TCCCGGAGAGATGCGCCATGTTGTCCCATAACGACGTC 1128 30 100.0 38 .............................. GCCAAGAGGCGTACCGGATGATCCTCGCAGAGGTGGGG 1060 30 100.0 36 .............................. ACCTGGACAAGGGTGACCAGACGGTGGGCCCGATGC 994 30 100.0 35 .............................. TGGTAGACGGACCGGCCCACCACGCCGAATGCTCC 929 30 100.0 37 .............................. CGGCGCCGAGCCGGCCACCGTGCGCCAGGTTGAGGTA 862 30 100.0 36 .............................. ACCTGCGGGGCGGGTCGGTGGCGCGGGGTTCTACGA 796 30 100.0 35 .............................. TGCCCCCCTGTCGCGTGATCCCCTCTCAGGCGATT 731 30 100.0 38 .............................. ATCGCGCCCTGCAGGGTGTCGCGGAAGAACGCCGAGAC 663 30 100.0 38 .............................. TTGGGGGGGCGATGCTGATCACCATCGGACTCAGGGTC 595 30 100.0 36 .............................. AATCTGAGCGCGCAGCGGCCACCTGACCCCCTACCC 529 30 100.0 36 .............................. GTCGGAGACGATCCGATGACCGCCGAGCCCCGACCC 463 30 100.0 36 .............................. ACTTCGTCCGGGCGCGGGGCTACGACGTGGCTAGAG 397 30 100.0 39 .............................. GCGTGCAGGCCGACGAGCCCCGCGGAGGAATCCGCGCCA 328 30 100.0 36 .............................. ACACCGACCCGATCCGGCTCCGGGACGCGGCCGTCG 262 30 100.0 35 .............................. AGTTGGCCGCCGCCGCTGCGGGTGGCGGCCGCCGC 197 30 100.0 37 .............................. GTGGCCATCCGCAGCGCCAGACTGCCCGTAGTGGTCG 130 30 100.0 37 .............................. CCTGTCCACCGGAAGTCGTCCAGGACCTCTAGCGGTG 63 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 100.0 37 GTCCTCATCGCCCCTGCGAGGGGTCGCAAC # Left flank : CCACACCGCGCTCGACGGCTGCCTCGTCCAGGCCGAGTTGTGACCCCTCGCAGGGGCGATGAGGACTGGGAGAGTCGTTCGACGTCGGCGCGCATCTGGGCGAGTTGTGACCCCTCGCAGGGGCGATGAGGACACTGGTCGGTCCATTCGGCGGGGGTCTTGCCGCACAGGGGTTGTGACCCCTCGCAGGGGCGATGAGGACGCTCGAAGAGGAAGCTGTTGCCGAGGTGTACGGCATCTGTTGTGACCCCTCGCAGGGGCGATGAGGACCTGAGAGGTCGTCGAGGGTCATGCCCTTGGGGGCCCTCGGTTGTGACCCCTCGCAGGGGCGATGAGGACGAGAACTGGATCCGCTCCTTGCCGATTTCAAGCCGTTGTGACCCCTCGCAGGGGCGATGAGGACCTCGGAGACCTGCGCGTCGGCAGTGGACCGGAGATGTTGTGACCCCTCGCAGGGGCGATGAGGACCGGATCTCCCGTCGCAGTGGCTGAAGGAACTG # Right flank : CATGACACCACCCATGTCACGCAGATCACCGGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 1229-2188 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQT01000032.1 Actinomadura macra NBRC 14102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1229 30 100.0 35 .............................. ATCTCCGGTCCACTGCCGACGCGCAGGTCTCCGAG 1294 30 100.0 34 .............................. GGCTTGAAATCGGCAAGGAGCGGATCCAGTTCTC 1358 30 100.0 39 .............................. CGAGGGCCCCCAAGGGCATGACCCTCGACGACCTCTCAG 1427 30 100.0 38 .............................. AGATGCCGTACACCTCGGCAACAGCTTCCTCTTCGAGC 1495 30 100.0 39 .............................. CCCTGTGCGGCAAGACCCCCGCCGAATGGACCGACCAGT 1564 30 100.0 37 .............................. TCGCCCAGATGCGCGCCGACGTCGAACGACTCTCCCA 1631 30 100.0 38 .............................. TCGGCCTGGACGAGGCAGCCGTCGAGCGCGGTGTGGAG 1699 30 100.0 36 .............................. ACGGAGATGCCGTGTCGGCCGTGGACATCGGCGACG 1765 30 100.0 36 .............................. CCGTCCTGTCCGCCCATGAACATCAGCTCGCGCAGC 1831 30 100.0 36 .............................. GCGCGCTGAACCGGTCACTGGGCGGCGACGACCAGC 1897 30 100.0 36 .............................. CCCCCGAGCGGACCTCAGCCTGTTCGCTGACCAGCG 1963 30 100.0 36 .............................. CCCCCGAGCGGACCTCAGCCTGTTCGCTGACCAGCG 2029 30 100.0 36 .............................. CCCCCGAGCGGACCTCAGCCTGTTCGCTGACCAGCG 2095 30 100.0 34 .............................. ATCGCTGAGCCGATCCGTGTCGGGATCCACCAGG 2159 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 100.0 36 GTCCTCATCGCCCCTGCGAGGGGTCACAAC # Left flank : GACAATCGCCTGAGAGGGGATCACGCGACAGGGGGGCAGTTGCGACCCCTCGCAGGGGCGATGAGGACTCGTAGAACCCCGCGCCACCGACCCGCCCCGCAGGTGTTGCGACCCCTCGCAGGGGCGATGAGGACTACCTCAACCTGGCGCACGGTGGCCGGCTCGGCGCCGGTTGCGACCCCTCGCAGGGGCGATGAGGACGGAGCATTCGGCGTGGTGGGCCGGTCCGTCTACCAGTTGCGACCCCTCGCAGGGGCGATGAGGACGCATCGGGCCCACCGTCTGGTCACCCTTGTCCAGGTGTTGCGACCCCTCGCAGGGGCGATGAGGACCCCCACCTCTGCGAGGATCATCCGGTACGCCTCTTGGCGTTGCGACCCCTCGCAGGGGCGATGAGGACGACGTCGTTATGGGACAACATGGCGCATCTCTCCGGGAGTTGCGACCCCTCGCAGGGGCGATGAGGACCAGTTCCTTCAGCCACTGCGACGGGAGATCCG # Right flank : CATCGACGAATCATGCGGCTACAAGCCCACCTGGACCGTCCGGACGCCGTCCGCCGTACCTACCAGCTCCTCGCGGACCGCCTCGATGACCTCGACGTCGAACCCGATGACGAGACTCGTAAGCTCGTGAAGCTTCCGACGACGAAACGAAACGGGTGTGTCAATTTAACGGCTGATCTTGGTTGTTGAGTGGTCAGTTGTTGCTCGGGGTCAGGCGGCCCTCGAAGGCGATCTGGAACGCGTTCAGGGGTGCCTTCCAGCGCATGGTCCACCTCTTGCGGCCCTTCCCCGTCGGGTCCAGGCTCATCAGCGCCATGTAGATGCACTTGAGGGCGGCGGCCTCGTTCGGGAAATGTCCGCGGGCGCGGACGGCCTTGCGGATGCGGGCGTTGACGCTCTCGATCGCGTTCGTGCTGCAGATGACCTTGCGTATCTCGACGTCGAAAGAGAGGAAGGGCACGAACTCGGCCCAGGCGTCCGACCACAGCTTCACGATCGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //