Array 1 12954-6254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPW01000020.1 Methanosarcina mazei strain 3.H.M.1B.5 scaffold50_1_size29069-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12953 37 100.0 36 ..................................... GACATTTACTTTTCACTCTCCTTTTTTAACTGTTTC 12880 37 100.0 35 ..................................... ACAAAATAACTTCCCATTTCAGCAGGCGCAATATA 12808 37 100.0 34 ..................................... AGGGGACGTTCGACGCTTCAACGAATGCCGGCGC 12737 37 100.0 35 ..................................... AGAAGACCGAGGTGAAAATGAATTGAACTCTGAAC 12665 37 100.0 36 ..................................... TATTATTTTCAAGAGTGTTCGCCATTTCATAAACTG 12592 37 100.0 36 ..................................... ATTGTTGCAGGCTTAAACCCGTCCCGGTTAGCCTGT 12519 37 100.0 34 ..................................... ACTTCAAAAACATCGCCCGGAGCTATAAATTTAG 12448 37 100.0 36 ..................................... TGATGATCGAGAAGTAATGCTTACTATCCCTGAACA 12375 37 100.0 37 ..................................... AAATATCATATGCAGGAGCAGAGTCTTCAAAAACGGT 12301 37 100.0 37 ..................................... TCAAGCTGCACCCCAGGTCCTGCACTTTCCCGCGCCG 12227 37 100.0 35 ..................................... TTTTAAAAGTCAAATATTCCACTTTTCCAGGATCG 12155 37 100.0 36 ..................................... AGTGTAGGGGTATCGAAGAGAACATATACATCTAAG 12082 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 12008 37 100.0 34 ..................................... GGAAGTCCTCTTTTGGGAATTGCTTTTTGAATGC 11937 37 100.0 38 ..................................... AAATGTCTTCGACTTTTTTTAATTGGTCTGCAGATTCA 11862 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 11788 37 100.0 34 ..................................... CAAACTTTGTTAAGAGAGGGCTTACCCGTTCAAA 11717 37 100.0 35 ..................................... CGAATGGCTCTCTCTCTACCAACAAAGACCAAGTG 11645 37 100.0 35 ..................................... ACCATCCGTTACATCTCTTTGGTAATGTGAATTCT 11573 37 100.0 35 ..................................... TTTGACAATAGTACAATTTTTGAACCTGGTGTACC 11501 37 100.0 37 ..................................... ACTGTGCCAGAAATGAGAACATCGAGACAATTATGCC 11427 37 100.0 35 ..................................... TGTCAATAATTTATGCGCGGAGAAAAAACGGGGTG 11355 37 100.0 35 ..................................... TTCACTTTCCTTTTTCTTTACATAAATTTCAAACT 11283 37 100.0 37 ..................................... TGTTTTCAACATAATGAAAAACTTGGAGCCATCTGTA 11209 37 100.0 34 ..................................... TGAATACGAATTATGAAAGATTAAATCCAGATGG 11138 37 100.0 37 ..................................... TAAATGTCTGTAAAACCATATAGTATAATGTCAGTGG 11064 37 100.0 35 ..................................... TCACATATTCGAGTTTTGTAAGTTCACTAATTACA 10992 37 100.0 35 ..................................... AGGGTTTTAGAGGTCATTTTCACACCCCGAAGAAA 10920 37 100.0 34 ..................................... ACCGTGTCAATCGCTTACGGTTTTAAACAGCAAA 10849 37 100.0 36 ..................................... CCATGTGTGCAGCTCCGGGGTCTATATTCTATTCAC 10776 37 100.0 34 ..................................... TCTTGAGCGAGGGCGTTTCCAACGTCCACCTGTT 10705 37 100.0 36 ..................................... CAGGAGATGCTACAGCAGAAATTAAACTCGATGATT 10632 37 100.0 36 ..................................... TAGGTAATCCCGGCATGAAGCCCACACTCTGAAATA 10559 37 100.0 34 ..................................... CTGACCATATGTTTGCTCATAATGGGAGTTCGGG 10488 37 100.0 36 ..................................... GTGGATATAGAGTCTGAAAAATAATCATGTTGCTGA 10415 37 100.0 36 ..................................... AAGTCCTCTGTTGTTCTTATATGCTCCCGCGAAAGT 10342 37 100.0 35 ..................................... TGGTTGACGTATGCGGTTCTACCAGGAACATAATA 10270 37 100.0 34 ..................................... ATTAATCCCCCCTTCTCCCTTCAGCTTGAACAGA 10199 37 100.0 35 ..................................... TTTCGGCATCTTTGATACTCATCTCAAGAAGAACA 10127 37 100.0 37 ..................................... TATACATCATCAAATAATTAACAGTGATAAAAACATT 10053 37 100.0 36 ..................................... TGTAATTGTCATGGATCAGGACATTATCACAATTAT 9980 37 100.0 36 ..................................... AGAATTCGATTCAGGACAACATGGTATAATATCGAA 9907 37 100.0 36 ..................................... TCATTAGCCTTGTCAAGCTCCCATTTAAAACGGAGG 9834 37 100.0 37 ..................................... TTCGGATGATGCAAATTTTACAGACGATACCATCGCG 9760 37 100.0 35 ..................................... TAGATTTCTAGGGATCTATCGAAGTCTTCAGTATT 9688 37 100.0 36 ..................................... AAGAGCTCATTGATTCAAGTATAAGGCTGTGGGACT 9615 37 100.0 36 ..................................... TTTTTGGTATGTCCTGGAGCTGCCAAAATAACACAG 9542 37 100.0 36 ..................................... ATACAGGTTGACTGCCCGGAGTTCAAAACGCTTGAG 9469 37 100.0 35 ..................................... AGCAAAAAGTAAAATCAGGCACTATAAGCATAAAT 9397 37 100.0 36 ..................................... TAGGATCATAAATTATTATTTTCCCCGCTGCATCTG 9324 37 100.0 35 ..................................... TAACAATTTGATTACAGGTTGTGGATGGGGAAACA 9252 37 100.0 37 ..................................... TTGGGTTGGCGGGATCATCTCAAGCGGGTACAATAAT 9178 37 100.0 36 ..................................... AAATTCCTTCTGAAGAATTGAACGGGGCTTCAGTTG 9105 37 100.0 35 ..................................... TTTCCTGGTTTCAGCCATTCGGGCAATTAGATTAA 9033 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 8961 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 8890 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 8816 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 8742 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 8669 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 8598 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 8523 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 8451 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 8377 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 8305 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 8234 37 100.0 36 ..................................... TGATGATAGAGAATACGAAATCGAGAGTTTCAAACG 8161 37 100.0 35 ..................................... TACTGATGACTTTGATGATATTGCCGACTCTACTA 8089 37 100.0 34 ..................................... TCATTAAATGCTTTTCAAGACTGGTATTATCAGG 8018 37 100.0 36 ..................................... TATATGATTAGTGTATAGTAAGAGTATTGAAAAGCG 7945 37 100.0 37 ..................................... ATACAAGCTAAAGTATCTAATTCTACCTCTACTACAC 7871 37 100.0 35 ..................................... GTTGCAGGGTGGGGAGATGGGACACAGCTTAATGA 7799 37 100.0 34 ..................................... TTCCTAGTCTTAGATCGGCATACCTGAGGGCCTT 7728 37 100.0 33 ..................................... ATCAATCGCGGAATCCCTTAAAATTCTGGCAGC 7658 37 100.0 35 ..................................... TCTGCTGGGCCGGGGTTCAAAATAATCTCATCAAG 7586 37 100.0 35 ..................................... AATATTCTGAAAGGTTGCAGGCTGAAGACAGATGT 7514 37 100.0 34 ..................................... CAACAATTGGGTTACTATTTTGTGTGTTGGTGGA 7443 37 100.0 35 ..................................... TCCTGGGGCTTCTTATGGCCTCTGTGGTCATGTTA 7371 37 100.0 35 ..................................... CTAAAATAGTAATGATAGTTTCATATGTATATATT 7299 37 100.0 36 ..................................... CATGTTTGAAGGACGCAACAGCTATGTTACGCCTGC 7226 37 100.0 37 ..................................... GTATCTACCCCTTCTCTATCCCATTTGTGTGGTGCCT 7152 37 100.0 34 ..................................... TTAACCTCAAAAACACCTAAAATCTCACAAGCTG 7081 37 100.0 37 ..................................... CTTAGGGATATGTTTAGCTCATATATAATGTATATGA 7007 37 100.0 37 ..................................... ATTTGCAATTGTATATAGTACAAAGTTATACATTGAA 6933 37 100.0 34 ..................................... TACTTTATATAGCTTTCTGCGTCTGATTCAGAGA 6862 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 6794 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 6723 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 6652 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 6580 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 6508 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 6435 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6362 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6290 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 93 37 99.8 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 32635-39458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPW01000078.1 Methanosarcina mazei strain 3.H.M.1B.5 scaffold13_1_size132519-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 32635 37 100.0 35 ..................................... ATTTCAACTGTTTCTTTTTTGTCTATTTTTTTGAT 32707 37 100.0 37 ..................................... CAAGTTCCCCTGCTATGATAGATGAGTCTGTTCCGGG 32781 37 100.0 34 ..................................... TGCGTTTGATAATAACCTGAACGAAAATCACCGG 32852 37 100.0 34 ..................................... CCATTTTTACACCTGTTATTTTACCAGACTTTTT 32923 37 100.0 34 ..................................... CCATCAGGTCTGATCCTCTGTATGAGTTCTCTTT 32994 37 100.0 34 ..................................... GGACATACAGGCTTTGCTTTCGCTGTCGTGCCGT 33065 37 100.0 35 ..................................... AGTATCTTGTTTTCTAATTCCAACCTCTTATTTTT 33137 37 100.0 37 ..................................... CAAGGTCATATACTCTGTTTTTTAGTTCTAGAATTTC 33211 37 100.0 35 ..................................... CATGGATCTCTCTGTCTTCGTAATCTTTAAGTGGT 33283 37 100.0 33 ..................................... TTATCAAGATGTTTCCAAGAGTAATAAATCCGA 33353 37 100.0 35 ..................................... CAGTCTCGCTCATCTTTAGTTTCCTCCTATTTTAC 33425 37 100.0 37 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAGAA 33499 37 100.0 37 ..................................... CTCTCTGAAATTTCTTCGTTTTCCTCTGTCATTCCGA 33573 37 100.0 36 ..................................... GACGGGTTGCTGCTTCCAAAAGTTCGGGAAATTCAA 33646 37 100.0 34 ..................................... TTACTCTGCTTTCTCTATTCGGTTTATATGCAAG 33717 37 100.0 36 ..................................... CACATTAAAATAATGAAATCTGTATTTGCTTTCAAC 33790 37 100.0 34 ..................................... TAATATAAGTCGCCTTGACATAGAAAAATTAAGG 33861 37 100.0 36 ..................................... ATAGACCGCACAAAAGACGACGCACTAGAAAAGCTT 33934 37 100.0 36 ..................................... TGTTAAAGAGGTATGGTTAGAGAAGGGCGTGCCGGA 34007 37 100.0 35 ..................................... GCAGATGGCGAAAAATGTTATTTAGTTGATAAGAA 34079 37 100.0 33 ..................................... CGGACTTAAGGAATCTATTGTTTGGATGGATTA 34149 37 100.0 35 ..................................... CCCTTCTTACCATCGTTCAAGCCTCCTGCTTCTCT 34221 37 100.0 35 ..................................... CACTTGCTAAAAGTGTGTATCCATTCCCTAGATCC 34293 37 100.0 37 ..................................... GACGACTTGAAGAAAGAGCTTGAAGAGCTTAAAGAGG 34367 37 100.0 37 ..................................... TCGACAATATTTGAATCCAGATTTGGATTTAGTTTTT 34441 37 100.0 35 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCGACAAGTATC 34513 37 100.0 36 ..................................... ATAAGGACGCAAGACCGGACTTAGGCTGTCTTCAGG 34586 37 100.0 38 ..................................... TAATAAGTTAGGTGGTCCGTGTCAGGCATTATAAAGTG 34661 37 100.0 35 ..................................... TATTCCTGATTCGAACAGGAATCATAGCCTAACTT 34733 37 100.0 38 ..................................... TAAGTCGTTTGCGGAAGCAAAACGGGACATTGTGAGAA 34808 37 100.0 35 ..................................... GGTATTCCATATATAGTAATAGTAATAATAGTATT 34880 37 100.0 37 ..................................... CCGTAAAAGTAGCTCCACTTGTAAAACATGTAATTGC 34954 37 100.0 36 ..................................... GGTAAATTGATGCTGGAGCTGCACTTGTACTGAATA 35027 37 100.0 37 ..................................... AAATCAGGTTTTGATCTCTAACCAAAATCTTTTTATT 35101 37 100.0 36 ..................................... ATCAGTCGCACCAGCCAGCCCACAAGTCAACAAAAA 35174 37 100.0 34 ..................................... TGTGAGCGTATAAGGAAGTGGTCAAACCTACAGA 35245 37 100.0 35 ..................................... TGGCCCAGTAACTACATCATCAGCAAACATAATTT 35317 37 100.0 36 ..................................... TTCAGTTCGTCTTTGCCGGGATCTCAAAACTCAAAT 35390 37 100.0 35 ..................................... ACATGAAAGCTATACAAAGCTGATGCCAAAAATAT 35462 37 100.0 34 ..................................... AGGACGTTGCAGGCGCGACGGATAAGGCTGCTAA 35533 37 100.0 36 ..................................... TTATAATCGTAACCCTTGCGCCCGTTCATGATCCAG 35606 37 100.0 38 ..................................... TAACTGTATTCATTTTCAAGGAACCGCTTCAGTTCCGG 35681 37 100.0 34 ..................................... AGGAGGAGGATACATATCTCAGTTGCTCTATCAA 35752 37 100.0 33 ..................................... TTCCAATGAAATTGTGGTATCCCATTCCTAAGC 35822 37 100.0 36 ..................................... CGCATTTTGTATTCCTCCCATAGCGTGCAGTATTAT 35895 37 100.0 36 ..................................... CATCTAATTTAGGATCAGACCAACGTATCAAACCGC 35968 37 100.0 35 ..................................... ATAAAACAGTTGATGCATACGCTGTGCTTTGTGAA 36040 37 100.0 37 ..................................... TCAAGTCCATCAAATTCATTTGATCTGCATTCGTGTC 36114 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 36185 37 100.0 35 ..................................... AAGATATTATCTCTTATCTCCTCTTGCATTTCTGT 36257 37 100.0 37 ..................................... TGAAACATACTCTCATCGGGTAGCTGCAAGAGTCCCT 36331 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 36402 37 100.0 35 ..................................... TGATAGAATATGTACGCATATCCAGCCAATGCCGC 36474 37 100.0 37 ..................................... TACTCACATTAACAATATCGTCCAACCTTTCGACGGC 36548 37 100.0 38 ..................................... ATGACAACGTTAAACCCTCCCAACCAATATCAATAGAA 36623 37 100.0 37 ..................................... ACCGCGACAGTCGCCTGATCCGCGTCTCCCTTCACCC 36697 37 100.0 32 ..................................... ACGAACTGCCAGCCGTAGAATCAGCAACTTAT 36766 37 100.0 38 ..................................... CCTTTTTATCGAGCGAAGTAACTTCAACTGAAAAAAAA 36841 37 100.0 37 ..................................... CCATGTGGTGAAGTCCGTAGCTGGCGTTTGTTGAATC 36915 37 100.0 34 ..................................... GCAGCTTCAGGAGACAGTCTGACAGTAACAGTTT 36986 37 100.0 36 ..................................... TACTCTTCATAGAAGTCTTTCAGGCTTTCAATATCG 37059 37 100.0 35 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAA 37131 37 100.0 35 ..................................... ATAAGGTCACGTCTATTTATGAACTTTTGAGAACA 37203 37 100.0 37 ..................................... AGAGCTTCACAAGCGCAATCTCTAGCTCCCTGAACAA 37277 37 100.0 36 ..................................... GGATGACTCTCGATTACATAGACGAAAATCCTGAAT 37350 37 100.0 35 ..................................... CTGAAACTCTTCCTGGAGATGGGACTGATACAGAC 37422 37 100.0 36 ..................................... ACTTTAGGTTGAGCCATTTGCTGAACACTAAGATCT 37495 37 100.0 37 ..................................... AGATATATCTGGCTGTCGTAAACACGTTCCGGTTTTT 37569 37 100.0 35 ..................................... TGATTCTTGGGGGCCGGCTTTCTGGCTGGTTGGAA 37641 37 97.3 36 .....C............................... TCCATCCTGTTTTCAAACTGCTCTACAATAAAAGCA 37714 37 100.0 35 ..................................... CTGCACAACTAATGTACTAATTTGTACTATGAAAT 37786 37 100.0 38 ..................................... CATTGCAGACTGATGGTTATGTCTGAGCGATAATTATA 37861 37 100.0 37 ..................................... TTTGTACATCCTGATATTTTTGACACATCTGTTCTAC 37935 37 100.0 35 ..................................... ATTATCATCAGTGTACTTTCAATGACACTGATTCT 38007 37 100.0 35 ..................................... AAGTAGTCTATGAAGATAAGGATTTAACACAATTC 38079 37 100.0 34 ..................................... ACATAACCTAACATAAGTTATATATACTATTAGG 38150 37 100.0 35 ..................................... TTAATATCTGCATCATACCAGGAATAACGGTTATA 38222 37 100.0 35 ..................................... AAATTGCATCGGCTGAGAATGTGTTAGAATACCGG 38294 37 97.3 33 ...........G......................... TAAATTAAAATTAGTAAATCCTTATACAGATGA 38364 37 100.0 35 ..................................... GATTTTCTGCTATACACATCTGTTCATAGTTGTTC 38436 37 97.3 37 .....C............................... TGTATGACTTCGTGATTGCAAACAGCCCATTGCTGAT 38510 37 97.3 35 .....A............................... ATCCTCCTGGTATGGGTAGCTGGATTTTTCTTTTT 38582 37 97.3 35 .....A............................... TATTTTCCTTTCAAATCATCAATTTCAGATTCAAA 38654 37 97.3 35 .....A............................... CCTGATACTGCTACTGGTCTCTGTTGATAGAGTGA 38726 37 97.3 36 .....A............................... AACGCAGTGGTGCAGGCTCTTATAGAGGTCGGAAGT 38799 37 97.3 37 .....A............................... AAAGCGGTTCTGGATCGTCTCAAAGTTCTGACGGGGT 38873 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 38948 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 39023 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 39094 37 91.9 71 .....A.............................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 39202 37 81.1 35 TG...A...T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [39207] 39275 37 83.8 34 .G...A...T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [39282] 39347 37 81.1 36 GG...A...T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [39352] 39421 37 78.4 0 TG...A...T.GCT......................G | A [39426] ========== ====== ====== ====== ===================================== ======================================================================= ================== 94 37 98.8 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //