Array 1 949403-948179 **** Predicted by CRISPRDetect 2.4 *** >NC_019949.1 Mycoplasmopsis cynos C142, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 949402 36 100.0 30 .................................... CATTATAATAATAATTATTTTCAATCACAA 949336 36 100.0 30 .................................... CATATTAATGAACTTTATGGGTAAAAGAGT 949270 36 100.0 30 .................................... TAAGAATCGCTTTCAATTCTAGTGACGAAA 949204 36 100.0 30 .................................... GACCTATACAATCAAACATGCAACATAATT 949138 36 100.0 30 .................................... TTAAGTGTATAGCATTAAACATTAAAGAGA 949072 36 100.0 30 .................................... TTGAGAATTGCTTACAATTCTAGCGATGAA 949006 36 100.0 30 .................................... AAACATTAAAGACATAGATAAAAACATTTT 948940 36 100.0 30 .................................... AAACATTAAAAACATCGATAAGGATATTTT 948874 36 100.0 30 .................................... ATAGTCAAATTTTTGAATATTTAAACCCTT 948808 36 100.0 30 .................................... ATGAACTACATCAAAAGCAAAAATTATATT 948742 36 100.0 30 .................................... CATAATAATGTCTTTTATGGGTAAAAAGGT 948676 36 100.0 30 .................................... CTACTTATATTCCAGGTGTTACTTCCAGTT 948610 36 100.0 30 .................................... GACTTATATAATCAAACTTGTAACATAATA 948544 36 100.0 30 .................................... CATAATAATGAATTTTATGGGTAAAAAGGT 948478 36 100.0 30 .................................... TTCAGGTAAAGGGAAGTCTATTCTAACTTT 948412 36 100.0 30 .................................... TAAAAATTAAAGGTCAAACAACACCACTTA 948346 36 100.0 30 .................................... TTTCTGCTGTTAAAATTTCTTCATCATCAA 948280 36 97.2 30 .......................A............ ATATTCTAGCTGAATAAATGAAGCATCAAA 948214 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC # Left flank : TTAATAAAAACTATTTACAAAATGTAGCAAATAAAATTAATAAAAGAATCGGTTGAGAATTGATTAATATTAACGAATCTCCAGTTAAAATATTTAAGTCTATGTATGAAGTTGAAGGAAATAAGTTTATAGACGATGATCTGCTACATAACTTTTTTCAAAATGCACAACAAAATGAAAAACAAAATATTATATTGAAAGATTTTGATGATATAAGTGTAGCTAAATTATTACAATTTTCAAACAACTTTAATATTATTATATTGACTAATAACGCTTTTAATTTAGTTAAAAGTCCATCTGAGGTTACTTTAATTAACTTTGTTGGTAGCGACTTAATATCATTAGAAAACTTAGAAGCAGAAAATATTTTTGAATATTTTATAGAAGAGTACTTTCAGAAACCGTTTGATTGTATAGGTGAAGATGCGATTTATACTAAAGATGTTATGGAAAATATGAAAAAATCGCTATTTTTAAAATAATTATTAAGTAATGAG # Right flank : AGACTATCCCTTTTTATGTTGTTATAACAAATATTTTACATTCCTTAATTTTTCCAATCTCTTTTAAAATTGCAATAAAACAACAACCATTATTTTATTAATGATTGTTGTTTTATTAATGAATTTTAAGCATATTGCTTGTGTTTGCGTTTTAGGTTAGAAAAACATTGATTTTTAATTTAAATTTTATAATGAATTAAGTAAATCTGAAATTTTCTTTGCAGCAATAGCTCCATCACCAACAGCTGTAACGATTTGACGAATTTCTTTTTTTCTAATATCACCGGCTGCAAAAATTCCTTTTATTTTAGTTTGCATATTTTCATCTGTGATAATAAAACCTTTTTCATCAGTAATATCTAAATCTTTAATGAATTTTGTTGTTGCTTCCATTCCGATATAAGGGAAAAATGATGCAATTTCAATAGTTGTTTCTTTTCCAGTAATATTATTTTTAATAATAGCTTTTTCAAGTTGTTTTTCACCTTCTAAACTAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //