Array 1 63299-62761 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZI01000065.1 Limosilactobacillus fermentum strain FUA3588 1108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 63298 36 77.8 35 TAC.A....C......AA.......T.......... GGCTGGGGATACGACGAAGATATCAACGAAGAAAC 63227 36 100.0 33 .................................... AGGAAAGAGGATTTTAATATGATCAGTGCTTAC 63158 36 100.0 35 .................................... TGCAATTAGGTGTCACTACCGAAAACAGGCTGGCG 63087 36 100.0 35 .................................... TCCAGACCATGTTTATCTGGTTTTCGGGAAAACTG 63016 36 100.0 38 .................................... ATTCATGCAAATCGAAAAGGATATGGTCAAATTCTATG 62942 36 100.0 38 .................................... ACGTTCGACTATTTCGGCGATGATGAAAGCGAGGACGT 62868 36 100.0 36 .................................... TCGTTCAATGGTTTCAGGCTAACCCCGTCGTTATCC 62796 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 97.2 36 GTTTTCGTCTCCTTCTGGCGGAGATCAGTTCATATC # Left flank : TACTAGTTAAGGTTAGTTGCATTTTCAAGCGTTCATAGCGGTGTTCCTGATTGTAGGTAGTCTCGATCATTTCTAAAGGGGAGTGGCTTCGGTCACAAAATAAAATTCCAATGTGATTAAGGACACAATATTCAATCACCCGCTCCGATAGATAACACTTTCTATTATCAAATACCAACGTACCGATATCATCAAAGGTCAGATACTTCTTTTCCTTCGTCTTGATATTTGAAAATTTTAACCCTTCTTTAGTGACACCAACAAAACATTCATTCTCCACATAAACTATATTCTTCACCCTTTACCCCTCCCGAAGTAAGGACCTGCCGATAAATCAACATCCTACTATTTCATTTGGTGTTAATTTCTTTCTCTCGAATATAACCTATGCATCAATTATAAATTATATATCTAGTCTACTGCAACGAGCTTTCTTGGCCCCTAAATCTAAAGAGAGCGTGTATTGAAATCTAAGGATTTCGATACACGCTCTCGCTTTT # Right flank : ATTACCAAGATTGAAAAGAACGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGAAAGAGATGAAATTGCCGAAAAGTTTTCGTCTCCTTCTGGCGGAGATCAGTTCATATCGGCGGTTACCTAGTGATACGTGACGAGTTTTAAAAAGTTTTCGTCTCCTTCTGGCGGAGATCAGTTCATATCCGATCCTGCTAACTTTGTTGCTAAATCAAGGATAACTTGACAAATTTATGCCCTCAATTAAACCAGGCGGGTACTCATTCAAGTTTCCCTGGCCCTTTTTCTGGGCATTGTCAATTTCGAATATTAACTCTATATATTATAACTTAACTAGTTCAGTAATTGAAATTATAATTCCTTAATTTTGAACCCACATTTTCCCATTTCATAGAGATTTTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCTGGCGGAGATCAGTTCATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 13818-16777 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZI01000057.1 Limosilactobacillus fermentum strain FUA3588 1052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13818 29 100.0 32 ............................. AATCTTCTCGCCCTCGTCAAAGTCAGCATCAT 13879 29 96.6 32 ............................C ACGGCGGCGAAGGTGGCTGGGGTAACGTCGGA 13940 29 96.6 32 ............................C TTAAGAAGCTTGCACATGGGACGTCAGCTAAC 14001 29 100.0 32 ............................. AATCTTCGGATCGTAAATCCGATTCAGTTCTT 14062 29 100.0 32 ............................. AGTAATGACTATCAAAACATTATTAGTAGCCA 14123 29 100.0 32 ............................. TGTCCCAATATTCAGGTGTTTGTTCAATGTAG 14184 29 100.0 32 ............................. CTAGTAAGTGCTCAACGCCCCGATCGTCTGGT 14245 29 96.6 32 ............................C TAACAAATTAGATGAACAAGTTTCAGCAATGA 14306 29 96.6 32 ............................C CCTAATTTTAATATGTTATTAGGTAAAAGTTA 14367 29 100.0 32 ............................. GGGGGCAGTTGCTTCGTGGCTATGTTTCCGGC 14428 29 100.0 32 ............................. TGGAATGGCCGGATTGCTAGTGGCAGTATCTG 14489 29 100.0 32 ............................. ATATAGTTTACCCGTGACAATTGCCCCAGTTT 14550 29 100.0 32 ............................. ACTGGTGCTGCCAACTTAGCCTTGACGTAGTA 14611 29 96.6 32 ............................C TCTCAACGGGATTCAAAACGCAAATCTGATCT 14672 29 96.6 32 ............................C TTGATGTTCCTGCTTTAGCCATCTACTTCATT 14733 29 100.0 32 ............................. GGTGAGGATATCACCGTTTGAATACGACGTGA 14794 29 96.6 32 ............................C TACTTGATGAAAGCAAGGGAAGAATAGTTGAT 14855 29 96.6 32 ............................C GAAGGCCAAATTAACGATGCACTGTGGAAGAT 14916 29 100.0 32 ............................. TGGGTTGTCCCGTTGTCGCTTATCAAACAAGT 14977 29 96.6 31 ............................C ATACGCTTATTCGCTATAACCAAACTTGCCG 15037 29 100.0 32 ............................. ACTTGCAAACGATCGCCAATGATGATATCAAG 15098 29 100.0 32 ............................. TGGAATAAAACTGGAGAAGAATTTAATGGGCT 15159 29 100.0 32 ............................. AGCCAGTTAAGGCAGTCTTATCGAGCTTGCCC 15220 29 100.0 33 ............................. CATCACAAGTGCCGAGACAATGTGTGTCGGCCT 15282 29 100.0 33 ............................. GAGCTATTTGATGGTGATGAAGAAGCCTATCAA 15344 29 96.6 32 ............................C TCGTCCCACCGGTCGTGTCGATAAAGTACTTG 15405 29 96.6 32 ............................C ATCTCACGTTCAGTAATGTGTCTTTTGGATAG 15466 29 100.0 32 ............................. GGTCAAGCTCCAAGACCAGATCAACACGGCCT 15527 29 100.0 32 ............................. CTGGTCTTTGATGATAGCGTCGAGTGTTGAGA 15588 29 96.6 32 ............................C ACACGGAAAAGGCACAAGCACTCAAGGCAAAG 15649 29 100.0 32 ............................. AAACTTGTATAAAGGTTCCTTGAGATATTCTT 15710 29 100.0 32 ............................. TGTTGATAACCCTGCTTATTATATAAAGTAGA 15771 29 100.0 32 ............................. ACTATCTCGCTGTTTATCTACTTGACTATTTA 15832 29 100.0 32 ............................. AAATATCTTCAAGAGTTTCTTGGGTAAAAGCG 15893 29 96.6 32 ............................C AAGGTATTGGACCAAGCGATCTTAAATTCTGG 15954 29 96.6 32 ............................C GTGTCAAAAAGAATGGTAAAGCAGTTATGGTT 16015 29 96.6 32 ............................C TCCATCCGGAATCGGTGCTAACGCTTGGTAAG 16076 29 100.0 32 ............................. GTTACTAAGGGTTTAGGGCTAACGGTTGCCTT 16137 29 100.0 32 ............................. TTCCGACCATGATAGAGAAGTTGTCAAAAAAA 16198 29 100.0 33 ............................. TGAGGACATCAATTACCTCAAAAAGGAATTATG 16260 29 96.6 32 ............................C ACAAGTTCAAAATGCGGTTGTATCATATCAAG 16321 29 100.0 32 ............................. GACCGTTCAACTTGGTGGTAAAGACGCCCAGG 16382 29 96.6 33 ............................C GAGATGGAAGGCCAAAACTACACTGTCACGGTG 16444 29 96.6 32 ............................C ATAGTTCGAGCTTGTAAACTGTTATAGTTTGA 16505 29 100.0 32 ............................. AAGACCCACCATTAGGTTTGGCATTGACACTT 16566 29 96.6 32 ............................C AGACCAACCTTGGTTCTTGCGCATTTGAACAT 16627 29 96.6 32 ............................C TCACGCAAACTCAACAGGTAATGAAATGCTAC 16688 29 100.0 32 ............................. TGCCTTTTCGGAGGTTAAAAATGGTTTGCCTT 16749 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 98.6 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACAGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGACTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGTCCTTACGGATTTCAAAGATTTTATTGGGCACGCAACAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCATGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGTTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : CCCTCTTTGTCCGGGAGTGTAAAATATTTTGTGTAAATTGAATTGAAAAAGGGAAAGCCTTCCCCGTATGATTGAAATCGCCAAAAACCAATCAGAATACGGAGGCTTTCCCCATGAACCAGTTTAACAAAGATATTATCGCAGCGCTATCTTCCGACAAAGATATTACCTTGAATGAAGTCTTACGTCGTCAAATCGAAGTGGCCGCTGATCAGTTCCTTCAAAATGAACTGACTGCGGTGCTAGGCTACGAACCACATACCCGGATCGACCGATCAAAAGACGATGAGAACTACCGGAACGGGGCGTACACCAGCACGATCGACACTGAGTACGGTGAAATTAATCTGACGATCCCACGGGACCGGTTAAACAAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //