Array 1 40378-39433 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJWY01000015.1 Escherichia coli strain MOD1-EC2431 MOD1-EC2431_15_length_109732_cov_41.5152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40377 29 96.6 32 ............................T TTTAATGGCAAGTCAGGCTGAGGTCGCAGCAC 40316 29 100.0 32 ............................. GTGGTGTCTGGTCTGTCGTTCACTCCCGCAGT 40255 29 100.0 32 ............................. GTTATCCCACGGCTTACCAGGTACTTTTCTCC 40194 29 100.0 32 ............................. AATTAATTGCCTCGCCTTTTCAGTCGTCGCCG 40133 29 100.0 32 ............................. CCTGTGAGCCTGTCAGCGTCGAATAAATATAA 40072 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 40011 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 39950 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 39888 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 39827 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 39766 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 39705 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 39644 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 39583 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 39522 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 39461 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66839-66077 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJWY01000015.1 Escherichia coli strain MOD1-EC2431 MOD1-EC2431_15_length_109732_cov_41.5152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66838 29 100.0 32 ............................. CGCCGCATGACAGGGTCGAGCAGGCGTTTAAC 66777 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 66715 29 100.0 32 ............................. TCTGCCAGTTCATTCAGGGCTATCGCCAGCTC 66654 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 66593 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 66532 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 66471 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 66410 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 66349 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 66288 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 66227 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 66166 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 66105 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //