Array 1 948116-949608 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023313.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948116 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948177 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948238 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948299 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948360 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948421 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948482 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948543 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948604 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948665 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948726 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948787 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948848 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948909 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948970 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 949031 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 949093 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949154 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949215 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949276 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949337 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949398 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949459 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949520 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949581 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965740-967704 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023313.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 965740 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965801 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965862 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965923 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965984 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 966045 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 966106 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966168 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966229 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 966290 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 966351 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966412 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966473 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966534 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966595 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966656 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966717 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966778 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966839 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966900 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966961 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 967023 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967126 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967187 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967248 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967309 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967370 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967431 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967492 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967553 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967614 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967675 29 96.6 0 A............................ | A [967701] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //