Array 1 90-972 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZD01000076.1 Escherichia coli strain MOD1-EC6360 MOD1-EC6360_76_length_17985_cov_26.4968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 151 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 212 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 273 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 334 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 395 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 456 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 517 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 578 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 639 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 700 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 761 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 822 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 883 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 944 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAATAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95195-94130 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZD01000009.1 Escherichia coli strain MOD1-EC6360 MOD1-EC6360_9_length_103846_cov_29.9554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95194 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 95133 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 95072 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 95011 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 94950 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 94889 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 94828 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 94767 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 94706 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 94645 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 94584 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94523 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94462 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94402 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94341 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94280 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94219 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94158 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //