Array 1 462807-464842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQB010000021.1 Cronobacter sp. HA18006 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================== ================== 462807 28 100.0 32 ............................ TGCGCGCACTCAGGTCATTCAGCCTGCGCTTG 462867 28 100.0 32 ............................ TGCCCGTGAAAAGACCAGTAATCATCCTCTTC 462927 28 100.0 33 ............................ CCGCAAAACTGGAGTGGGCCGCACAGGAGGGGT 462988 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 463048 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 463108 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 463168 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 463228 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 463288 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 463348 28 100.0 32 ............................ AGCGCGAGCTTGACATGTTAAATATCTAAGGA 463408 28 100.0 32 ............................ CCGCCGTCGCGCTGTTCTGCGCGGATTTCTCC 463468 28 100.0 32 ............................ TCCGTCCGATCGTTTAACGACTGGAAGGAAAG 463528 28 100.0 32 ............................ AGAGAAAGGTGCGAACGGCGTACCGGACAGGC 463588 28 100.0 32 ............................ CAGCGCTTCGGCGATAATCTTCTCGCCGCGCG 463648 28 100.0 32 ............................ ACCAGCTATCGACCGCGCCCACATCTGCGTCG 463708 28 100.0 32 ............................ GTTACGCCAAAATCAACGGGCGATAACTGCAG 463768 28 100.0 32 ............................ TTTGCCGGGATCGTCGCTCATCAGCATCATCA 463828 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 463888 28 100.0 32 ............................ ACACTATAGTCACCTAAATTCAGAGACGGTTT 463948 28 100.0 32 ............................ TATGGCTGCGACCGATATTGCAAAAATCGTTG 464008 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 464068 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 464128 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 464188 28 100.0 59 ............................ GCTGAGCAGATACAGGCAGCTTAGAAATTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 464275 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 464335 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 464395 28 100.0 32 ............................ TCTGGCGTTCGGTTTGCGGCGGTATCGTCCCA 464455 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 464515 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 464575 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 464635 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 464695 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 464755 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 464814 27 92.9 0 ........................-..T | T,G [464834,464837] ========== ====== ====== ====== ============================ =========================================================== ================== 34 28 99.6 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 365894-364644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQB010000020.1 Cronobacter sp. HA18006 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 365893 29 93.1 32 .T..........C................ CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 365832 29 93.1 32 .T..........C................ CCCGCACCAGTTCTTACAACCGAGGGACGCCT 365771 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 365710 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 365649 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 365588 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 365527 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 365465 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 365404 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 365343 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 365282 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 365221 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 365160 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 365099 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 365038 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 364977 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 364916 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 364855 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 364794 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 364733 29 93.1 32 ............C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 364672 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCTTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 395266-392185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQB010000020.1 Cronobacter sp. HA18006 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 395265 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 395204 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 395143 29 100.0 32 ............................. CCAACTCAAACGCCGAGCCGATTCACGTATCT 395082 29 100.0 32 ............................. CCTGCCGTTGCGCGCGGGTGGCGGCGCGATAC 395021 29 100.0 32 ............................. TCGGTTTTTATGCCGTAATAGCGCCACTCTAT 394960 29 100.0 32 ............................. CGCGTAGACGGTGCGGGGAGGTGTTCAGTTAC 394899 29 100.0 32 ............................. CATCTACCACCCGGCGCGGTGGTCGTGATTGT 394838 29 100.0 32 ............................. GAGTCGGTTCCGCGCTTCAACGCAAGGAAAAA 394777 29 100.0 32 ............................. AGCTTTACCGCGCTCAAGGATTTCCCGAATGG 394716 29 100.0 32 ............................. AATCTCGCGTCTGCATTGTCGCGCCAGTTATC 394655 29 100.0 32 ............................. GACTTTGCCACGATACCGAATGCGATCATGTC 394594 29 100.0 32 ............................. TATGACATACTATGAGAGCGCAGCGGGCGAGG 394533 29 100.0 32 ............................. AATCGACACCTTCTTACCGTCCACCAGCGTAT 394472 29 100.0 32 ............................. CCTGGAGTCGGGCGAAGTCGCGTTATATACCG 394411 29 100.0 32 ............................. CTGCGTTCGTCGTCGAGCTGCAGCACGTTGTT 394350 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 394289 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 394228 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 394167 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 394106 29 100.0 32 ............................. GACGCTTTGACGGAATGACGGACATGTATGAA 394045 29 100.0 32 ............................. TGCTGCAAAAAGAATTACTTGGCACCGATGAT 393984 29 96.6 32 ......................G...... ATCCGCGGGGAGGAAACACTGACGGTACATAC 393923 29 100.0 32 ............................. GCCATGAGAGAGACGGCATAGACCTGAATCAG 393862 29 100.0 32 ............................. GCTGACGTTCTGCAGCCATGCGCCTACGTGAT 393801 29 100.0 32 ............................. ATCCAGCGTGAGTAATATATAGCTATGTTATT 393740 29 100.0 31 ............................. AAACGGCGGTTACCCTGCCGGGAACGTGGCG T [393712] 393679 29 100.0 32 ............................. CAGTCTCTGGCAACCTCCCAGCATTCGCTACT 393618 29 100.0 32 ............................. CGGTCCATTTTCTTACCAAAACCGTATGTTTT 393557 29 100.0 32 ............................. CAATTCTCCCGCCGCGGGTATACCGCGGCAAA 393496 29 100.0 32 ............................. CTGGTCAGCGTAAACGCCGCAAATACGACAAA 393435 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 393374 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 393313 29 100.0 32 ............................. GCTAGCCAGGTCGTTGCCAGCTTCATGCCCTC 393252 29 100.0 32 ............................. ACAACTGGCAACTGGTGGATATCGAGACCACT 393191 29 100.0 32 ............................. TGCGTGCCACGGGTAAGGAATACGCCAGCTTT 393130 29 100.0 32 ............................. GGGTGGCATTTAACCCCAAATACCCGCCGCCA 393069 29 96.6 32 ..A.......................... GCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 393008 29 100.0 32 ............................. AATGCGATCATCGATATCGGGCAGGCTGTCAT 392947 29 100.0 32 ............................. GTGTGAGACTTTTGCGCCGCCTAACTTGATCG 392886 29 100.0 32 ............................. CAGGAGATCGCCAAATCAACGCCCAGCCAGAC 392825 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 392764 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 392703 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 392642 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 392581 29 96.6 32 .C........................... GCGGTTGCACTCCACCGCGAAACCCTCGAACC 392520 29 100.0 32 ............................. TTTTCGAAATTGAGCATATTTAACCTATGATT 392459 29 93.1 32 ........T..A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 392398 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 392337 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 392275 29 93.1 33 .C..........T................ AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 392213 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //