Array 1 56-3316 **** Predicted by CRISPRDetect 2.4 *** >NZ_DUWP01000100.1 Xanthomonas vasicola pv. zeae strain X23 100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 56 31 87.1 34 .......T...G.C..............G.. GCGCTGCCCGTGCGCACGCCGCCGGAGTTCGACG 121 31 100.0 36 ............................... GTCGGTGCCTGTCGGCACGGCGCATACTTTGCCCAT 188 31 100.0 34 ............................... GGCTACAGCCGCACCTGTCCAACGATTCCCGATG 253 31 100.0 34 ............................... ACAACTCGGAGGCGAATCACAGTCGTCACCGCCT 318 31 100.0 34 ............................... CTGAACCCGGGCGCTGTCTATGCCACATCCCCAA 383 31 100.0 35 ............................... ACCGTGGGCACCCAGTGGCCGCGCTTGATGGCGAC 449 31 100.0 34 ............................... CTTCAAGCCGACGTGCAGCAGCTGCGCTAGCAAT 514 31 100.0 35 ............................... ATTGCGGCCGGGAAATAGCCAAACAGGACAGCATG 580 31 100.0 36 ............................... TCAAAAGGCTAACCCGGCTTGTGAGGTCTGGCTGGA 647 31 100.0 36 ............................... CAAGCATGAGCACTCACAGTGCGCCCGGCTCGGCTG 714 31 100.0 34 ............................... CCACTCGGGGAAGTGATTGCATAGATGCCACTTT 779 31 100.0 33 ............................... TTGATTACACCCTGCAACACATCTGCACCCATC 843 31 100.0 35 ............................... CCATGCTTTCCTAACGTGGCACTCTGAGCGGTGGG 909 31 100.0 36 ............................... TATGCTGAACATGAAACAATGACGACACATCCGCTT 976 31 100.0 35 ............................... TTGCCCTCAATGCCAACGGCTACATTGGTGGCTTG 1042 31 100.0 35 ............................... CGGAATGCACCAGTGTGGAACCAAGGGAATGGCCC 1108 31 100.0 34 ............................... TGATAGCCCGTCACAGTAACACCAACACTTGATT 1173 31 100.0 34 ............................... TGCGACTTCAGGGGCCGCAAGTACTCTATGACCA 1238 31 100.0 35 ............................... TTGGTAGCTGTTATCTCGGTACAGAGGCATACCGG 1304 31 100.0 35 ............................... TCTCTATTGGTTGGGCTTGCGTCGGTTGGGTTACT 1370 31 100.0 35 ............................... CCGACGAACGCATACAACAGATCGCAAAGATCGCC 1436 31 100.0 37 ............................... GGTGTCAGTTGGCCGTGCCATTAGGCAGCCTCCGCGA 1504 31 100.0 37 ............................... TTTACGCCTGAGGGCAAGACCATCGAGCAGTGCGATA 1572 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 1637 31 100.0 35 ............................... CGCCGGTATGCATCCTTTGCAAAAGTCATTACAGC 1703 31 100.0 36 ............................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 1770 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 1837 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 1902 31 100.0 35 ............................... ACCATTGTGCTCATGTAGGTACTACGGGCGGCACT 1968 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 2035 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 2102 31 100.0 35 ............................... CGTTACTGGCAACGAGGCACGAGTTTCCCGGCTGC 2168 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 2234 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 2300 31 100.0 36 ............................... ATTGTCGTGATCGCCAAGGCTGTTATCCGCGCTGTA 2367 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 2433 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 2499 31 100.0 33 ............................... TGGTGGCTCTTCGGCTAGTAATCCCGTGGGCCA 2563 31 100.0 35 ............................... CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 2629 31 100.0 36 ............................... CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 2696 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 2760 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 2827 31 100.0 34 ............................... ATCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 2892 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 2957 31 100.0 36 ............................... CGCTCTTGGTGTATTCAGTTACGACCGATGCAACAG 3024 31 100.0 34 ............................... TATGCACACTACTGGAAGGGTGCACATAGCCCGC 3089 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 3155 31 100.0 34 ............................... CTTTCGCCGACCTTGATTAAGCAGCTTTAGCATA 3220 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 3286 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 50 31 99.7 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CAGTCATGACAGGCGTCATACGCGCCAGCGCTGCTGTACGCGCTGGCGACGTGGCG # Right flank : TGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54935-53657 **** Predicted by CRISPRDetect 2.4 *** >NZ_DUWP01000032.1 Xanthomonas vasicola pv. zeae strain X23 32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 54934 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 54868 31 100.0 34 ............................... GAGATACGCGACATGATTGCGTGGGTGTACGGCT 54803 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 54737 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 54672 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 54606 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 54540 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 54474 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 54408 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 54342 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 54277 31 100.0 34 ............................... TCCGCCAGGGCGTCAATATCGGCCTGGGTAAACC 54212 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 54147 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 54082 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 54014 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 53948 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 53883 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 53818 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 53752 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 53687 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 20 31 99.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : ACGGGCGCGTGGATTGAAACCAGTGCCTATGCAGCGGCTGTATCAGCTTCGACG # Right flank : ACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //