Array 1 4634-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHH010000276.1 Acinetobacter baumannii strain M14 NODE_276_length_4645_cov_5.301903, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4633 30 96.7 30 .............................A TTCCTATGTATTTTGAGCCTAATACACCAA 4573 30 100.0 30 .............................. TCCAACGAAATTATGACGCTGACAAGTCTC 4513 30 100.0 30 .............................. CACAAGACCATACTCACGAATAAATTGTTT 4453 30 93.3 30 ............................AA CAGGAACTTTTGCAGGTCGTAGCCAAAGAA 4393 30 96.7 31 .............................G ATTCCGAATTATTTGCGGATGAGAGCAGTAA 4332 30 93.3 30 ............................AA CAGGAACTTTTGCAGGTCGTAGCCAAAGAA 4272 30 96.7 30 ............................A. CGTCACAGCGCACTGGTTACTTAAAACAGG 4212 30 96.7 30 ............................A. CAACAACTTTATTAGCCTTCACAAGACCAT 4152 30 93.3 30 ............................GA TACGGGTAAACCGTATGAATGGGTTGATTT 4092 30 93.3 30 ............................AA AGATATTACTGGTGTATAGAGCTGAAGATT 4032 30 96.7 30 .............................A ATTCACTTGATGCAGGTGAATCAATATTAA 3972 30 100.0 30 .............................. TAGATACAGGCGTTGATTCTGCAAAAGTGG 3912 30 96.7 30 ............................G. TACCCAACCCTTTATCAATCTCTCGACCAA 3852 30 93.3 30 ............................AG GGTGCGCTTGCACGTCAAGAATATCTTGGT 3792 30 93.3 30 ............................AA CGAGATACTGTTTCAGGAGATTCACCCAAA 3732 30 100.0 30 .............................. TTTTTAAGTGTTTCATCCACAACATCATAA 3672 30 93.3 30 ............................AC CATCAATCGTGAAGCATCAAGGCGATAAAG 3612 30 96.7 30 .............................G CAAGACAGCTATATAGAACAGTTGGAAAAT 3552 30 96.7 30 ............................A. AACTTGCTTGTACGTTTCTAATCTTCAGTT 3492 30 93.3 30 ............................GG TGGAAAATGTACATAGACATTGCACCGAGA 3432 30 93.3 30 ............................CC CAAAGGCTCAAGAGTTGAGCGCGTCAACTC 3372 30 100.0 30 .............................. GCGAGTCAAGCCGACAAAGTAATCGCTATG 3312 30 93.3 30 ............................AC GGTGTCAGAGTTTTAGAACTCAATGATGGC 3252 30 93.3 30 ............................AG TTAATACCCGTTGGCCATATTGTTCAGTTT 3192 30 100.0 30 .............................. AGTCGCATTAGCGCAAAAGCTACGTGGATT 3132 30 96.7 30 .............................A ATGATGAAATCGATGAAATGTGGCGCTATG 3072 30 100.0 30 .............................. GTTGCAACACCGCCACCGCTGTGCCTTTTG 3012 30 100.0 30 .............................. CAATGTGTTTAAGATCGGGTCAAAAGCTAC 2952 30 93.3 30 ............................CC CAACTTTTTAAATATTTAATTCTTATAAGA 2892 30 93.3 30 ............................AA CGAGAAATTGGAACTACAAAAGAACCAAAA 2832 30 93.3 30 ............................GA TTATTCTGGTTATAACTTTGTCTGTGTAAT 2772 30 96.7 30 ............................A. CTTCCGCAATGGCCTTTTTGAATGCTTCAT 2712 30 93.3 30 ............................AG CCACGTCAACAGCAGCATTGGCATTAGTAA 2652 30 93.3 30 ............................GC TAAAGGCTAAAGCAACCAAGGTGAATCTTA 2592 30 93.3 30 ............................GA CGAGCAACACGTCAACGAACTCAAAGCAAA 2532 30 93.3 30 ............................GA CATGGCGAGTTGCAGCAGGAATACCATAAT 2472 30 93.3 30 ............................GA GTAATGCAGCACCAACAGCAGTAATCGCAG 2412 30 93.3 30 ............................CA AACGTGGGTTACATCTAGTTGCCTGAGGAG 2352 30 96.7 30 .............................A ACTTAGACTGAATATCTGATGCTAAAGATT 2292 30 93.3 30 ............................AG CCGGTGTTGATCTGATATGCGTTAGCCATT 2232 30 96.7 30 ............................A. ACGCGCCAAACATGAATGGGTTTAAAACGT 2172 30 100.0 30 .............................. TGTGCCTCAATATGATTTCAAATATGGTTT 2112 30 93.3 30 ............................GC CAGGGGCAACATACCGCGCTAACGTTAGTG 2052 30 93.3 30 ............................GC AGTATTGACTGTCGGACTTGTGACAACCTG 1992 30 93.3 30 ............................GA CAGGAACCGTCACTGAAAGCGCACAGGCTC 1932 30 100.0 30 .............................. GTAACAACTTTAATGGAGAAGCCTTAATCT 1872 30 96.7 30 ............................A. AACGAGAAGCGTTGCGTAGACTTACAACTC 1812 30 96.7 30 .............................C TTGTTATTTCTGGTAATAAATATCAGAACA 1752 30 96.7 30 .............................C AAATCTAAGCCATGCTCATTAGGCATAGGT 1692 30 96.7 30 ............................A. CCTGTCTCTTGGTCAATCTTGGCACGTAGG 1632 30 96.7 30 ............................A. TACCGACTGATTGTTGAGTGGCAATGTTAA 1572 30 100.0 30 .............................. ACACATGAAGTCAGCAAATGCCACCATGTT 1512 30 100.0 30 .............................. GAATCGGCCGCTTTGCGTATAAACACCACC 1452 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 1392 30 96.7 30 .............................G GAAGTCATGAATGTAGGTGTTGAGGATGGC 1332 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 1272 30 96.7 30 .............................G ATGCGGGTTGTCCACCAGTTATGACTACTT 1212 30 93.3 30 ............................CC AAGCTGTGAATGTTGGTAATGCTTTAAGCG 1152 30 93.3 30 ............................CG TCAAAACAATCAAAAAAGCAATGAGTACAA 1092 30 93.3 30 ............................AG TGAATGGGATTTATTCGCAAGGTGATATTA 1032 30 100.0 30 .............................. GTTTCAGTTGCATAGTCAAACGATGAGAAC 972 30 96.7 30 ............................A. TAGCAGGTGATTACGCAGTCTTATCTAATG 912 30 96.7 30 ............................A. TAAGCAAGGGCAGACCCCGACCGCCGAGCA 852 30 96.7 31 ............................A. TGACTTACAGCGTTATGAGAGATCCCTAGTT 791 30 96.7 30 .............................G ATGATTGGATAGAGATTCATGCGTTAGATT 731 30 96.7 30 ............................G. AAAAAAGAACATTTCCCGCCAAAATTGACG 671 30 100.0 30 .............................. TGGCAACCAGTCGCCCTATGCGACCTGATA 611 30 96.7 30 .............................G TAAAAAAGTTTAATAATTTTTTCAGTGAAT 551 30 96.7 30 .............................A CAGCAATAACGACCAAACCGATATAGGTAA 491 30 96.7 30 ............................A. ACGAACATCATTTACTTGCTGAAGTTGCTT 431 30 96.7 30 ............................A. GCTCTCAATAATTCGCAAGTAAAAGTGGAT 371 30 93.3 31 ............................AA AAAGTTTTTTTGACAATCAAGCCGGCAAGTT 310 30 96.7 31 .............................G CATCGAAGTCATAGAACGCTTTGAGTTTCCA 249 30 93.3 30 ............................GC AAGTGTCACCTTTAAGTGCACGGAAGAAAT 189 30 96.7 30 .............................C CATTCTCGCTAAGTGGCATCACACGCGATG 129 30 100.0 30 .............................. GGTTGTTTAGTAAGTTCAAAGCCCGTTGTA 69 30 93.3 0 ............................CA | ========== ====== ====== ====== ============================== =============================== ================== 77 30 95.9 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GTTTAAAGAAA # Right flank : AATGGATTTAAAGATTTCAACCGCTTGGGAGGTTCATGGC # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7786-6615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHH010000156.1 Acinetobacter baumannii strain M14 NODE_156_length_7795_cov_6.667971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7785 30 86.7 30 ..C.....A.........A....C...... CAGAAATGAATATTAACTTTAAACTTTATT 7725 30 80.0 30 T...CG..........TT..........T. TAGCAAGTCCCACAAACAAGGCGCAACTCT 7665 30 93.3 30 ............................CA TGACCCAACCACGTAAATTCATACCACACG 7605 30 93.3 30 ............................GC TCCGTAATTAATCAAGAAATAATCAAATTT 7545 30 100.0 30 .............................. TAGTTGCACCAGACTCCGCACAATCTAAAA 7485 30 100.0 30 .............................. CAAATAGATCAACTGGTGCGCCCTATGAAT 7425 30 96.7 30 .............................T CATCGAAATTTAGTTCTAATTCTTTAATTT 7365 30 100.0 30 .............................. TCTTTAATGTCGGCAACATGCTGTGCAAAA 7305 30 93.3 30 ............................GT AAATATGCTGCTTTAACCCGCCAAACGAAT 7245 30 96.7 30 ............................T. CATTAAGACGAATGCGGGCAATTGGTAATG 7185 30 93.3 30 ............................GA GATTCAAGTTTCACCGGATGGCACAAGTAA 7125 30 96.7 30 .............................C CAGAAAAGCAGAGTAAAGCTTCACAGCCAT 7065 30 93.3 31 ............................GT AAAAAAGAACATTTCCAGCAAAAATTGACGA 7004 30 93.3 30 ............................TT GCTGCCTGCAAACTTGTTTGGGGCTTTATG 6944 30 96.7 30 .............................C TGGAATTCAGCAGTAAATAAGGGGTTAAGA 6884 30 93.3 30 ............................TT TAAAGCTAAATGAGGGTTAAACCTAAGAAA 6824 30 93.3 30 .......T.....................A CGTGAACAATTGTTTTAGCTTTGAACATTA 6764 30 86.7 30 .............C...T..........GT TACTGGGTTGCGGAATATATTCGCAATTAT 6704 30 86.7 30 A......A.........T...........T TTTGATCTTTACTTATTCTCGCTTCAAACA 6644 30 66.7 0 .......A...T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== =============================== ================== 20 30 92.0 30 GTTCATGGCGGCATACGCCATTTAGAAAAG # Left flank : CCATTGTGA # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCTACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //