Array 1 370994-361446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYQ01000007.1 Bifidobacterium boum strain LMG 10736 Contig07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 370993 29 100.0 32 ............................. GCAAGACAAGGCACCAAGCCAGCCACCCTAAC 370932 29 100.0 32 ............................. GGCGCTTGCGGGCTGGAACCACCAAGAAATGT 370871 29 100.0 32 ............................. GGTCACGGTTCGCGTTGCTGACCAGCGTGTCC 370810 29 100.0 32 ............................. CGAATTGTCCGGCTCGCCTTCCGCATACGTGC 370749 29 100.0 32 ............................. CAAAGGACACGCCGCACATCAGGGGCGAGAGC 370688 29 96.6 32 ............................T ATCTGACCCGCATCTCGATTGGGCGTCGCTGA 370627 29 100.0 32 ............................. GGACGAGCACCGCGGCCGTCTTGCGCTTGTCC 370566 29 100.0 32 ............................. ATCCTGCGCCTTGTCCATCGTCTCGTCCACCA 370505 29 100.0 32 ............................. AACTCGACCAGGCCGCCAAACAGACAGCCGAC 370444 29 100.0 32 ............................. CAATCCAAGTCACTCATGCCTGGGCAGGCGTC 370383 29 100.0 32 ............................. GTCGCGTCGGACGCTGACTTCTTGTCGCCTTC 370322 29 100.0 32 ............................. GGCGTCACCATCACCGGCGGCACCATCCAGAC 370261 29 100.0 32 ............................. GTCACCTGCCGCATGTCATCGTGGCTCATTCG 370200 29 100.0 32 ............................. GCACGGTAGTCGGTGTGCATTTTCACGCCGCT 370139 29 100.0 32 ............................. GACGACATCATTGTACGTTAGATCGGGCAGGC 370078 29 100.0 32 ............................. AACAACAATAACAATGCAATGACTCTGACTGA 370017 29 100.0 32 ............................. GCGTTGGCGATGGGCGTGTCGTGCACGCCTGA 369956 29 100.0 32 ............................. TCGCCGCAGTATGCCGCAGATCGTGATACGTG 369895 29 100.0 32 ............................. TCAGTGCGACGAAAGCCACACCGTCATTATCG 369834 29 100.0 32 ............................. CGGGCAGCGTCACACTGCCCGCGCCAGACAAG 369773 29 100.0 32 ............................. CATGGATACCCGCCACCGTAGACCGGCCCGGC 369712 29 100.0 32 ............................. CAGGGCACTGAGGCGATTGCGTCCGCCGGTGA 369651 29 100.0 32 ............................. GCGCTCATATCAGGGTGGGCCGCAATGGACTC 369590 29 100.0 32 ............................. ATCGCGCAGCCACGACGCCGGCCGCGCGTGTT 369529 29 100.0 32 ............................. GTCACAGCAGGATCAAGACCAATTGCCCCACA 369468 29 100.0 32 ............................. GTGCGGATCCACGCCCCGGCGTTCGCCGAGTA 369407 29 100.0 32 ............................. GGAGCGACCGGCTCAGCGTAATCGCTGATATT 369346 29 100.0 32 ............................. GCTCATGTGGCTGGTGATGTGACATGCCGCCA 369285 29 100.0 32 ............................. AGGTACGTGTTCCTGCCAGTGTCCGGGTCCGC 369224 29 100.0 32 ............................. GCCGGTAGCCGTAACCGTCCCAGCACACGGGA 369163 29 100.0 32 ............................. CCAAACGCCCGGTAAACGTGCAAGTATTGATA 369102 29 100.0 32 ............................. TCGCCGTCGAACGGCGGTTCACCCATCGCGAT 369041 29 100.0 32 ............................. TGCCTGACCCTTCGCCCATTCCGATAACGGCC 368980 29 96.6 32 ............................T TGCGCCGTGCTTTCCGCGCTTTTCTCAGCGGC 368919 29 100.0 32 ............................. TTGTCGTTGACGGTCGCCAGTATGTCGCGCAA 368858 29 100.0 32 ............................. GGCATGTCGAACGGCATGTCGAGACTGTCCGA 368797 29 100.0 32 ............................. GAGTGTGCGGGACTCACATGGCCGGCGGTGAC 368736 29 100.0 32 ............................. ACGTGTACGTCAGCGAGGCGTTCGAGGATACG 368675 29 100.0 32 ............................. GTTTTTGTGGTGGAGTGTCTGGGGGTTCGAAT 368614 29 100.0 32 ............................. GGTAGGCTGATCGAGAACAGCGGTGCCACGAC 368553 29 100.0 32 ............................. CATGCGGGGCTGCCGGTCAGGCGACAGTCAAG 368492 29 100.0 32 ............................. TGCACACGACAAGTCAACCAATAACCCAGAAA 368431 29 100.0 32 ............................. GTGCCCCGCCGACTTTGGATGCGAGCCCGGAC 368370 29 100.0 32 ............................. CGGCCGGTGGCCCTGCCGATGTCATTCGCGCA 368309 29 100.0 32 ............................. ACGCCGAGGCTTGTTTCCGGCATTGACACTGG 368248 29 100.0 32 ............................. CATCTTATCGGGCTTGGCAAAGGCGAAGGCAC 368187 29 100.0 32 ............................. CCTTCTCACGCGCACCGAACATGATGACAGAA 368126 29 100.0 32 ............................. GCCATCAGCACGGGAATCAACAACATCAAGGC 368065 29 100.0 32 ............................. AGGTTGAACGCGGGACGCCAGTTGTGGCCGGT 368004 29 100.0 32 ............................. GTCGGCACCGGTATGCCGCGCGCGGCCGCCGA 367943 29 100.0 32 ............................. CGGGTGATGGCAGCGGATACGCGCTCCACCAC 367882 29 100.0 32 ............................. AGTCAGCTCGGCGACATGTTCAACGCGACAGG 367821 29 100.0 32 ............................. GACTCAGGACACGACTTCCCACACTCCGTAAG 367760 29 100.0 32 ............................. CATGCTCGAGCATTGCAAGGAGCATGACTGGA 367699 29 100.0 32 ............................. GTGACACGCCGATGCGATCGCAGTACAGGTCG 367638 29 100.0 32 ............................. TCACCTGCAAGTCTGATTGCCGCTGTATAATC 367577 29 100.0 32 ............................. CTCAGCAGCAACAACGAGCCAACATGCTACCG 367516 29 100.0 32 ............................. AGAATGGGCATCATGGTATCGGAGCATGACAT 367455 29 100.0 32 ............................. ATATCACTATCACGTCGGCTCTGTTGGACAAA 367394 29 100.0 32 ............................. TCTAAGTATAGGGCATTTCGCAAAACGACACA 367333 29 100.0 32 ............................. GGCAAGGACGTCCTCCATCTCACCTATTGGGA 367272 29 100.0 32 ............................. GGCTTCACGGGCTGGCAGCCGACGACAGAGAT 367211 29 100.0 32 ............................. GTGTGGAATAGTGTCGTCGCGTCAGTCAAGAG 367150 29 100.0 32 ............................. CAAATCTGAAAGGACTCTGAAATGAGTGAAAT 367089 29 100.0 32 ............................. TGCGTTGCAATAAAAGCACTAAATGACTCATA 367028 29 96.6 32 ............................T TGCCCGGCGGCGACCTTGTCCGTCGTGATGCT 366967 29 100.0 32 ............................. CATAAAATCCAGGTTGTGCGCTGCGACGAGGT 366906 29 100.0 32 ............................. TCGCGTCCACGTATGATGCGGCAGTGAGTGGG 366845 29 100.0 32 ............................. CGCGATGACATCCTCCGCGCAGTCCTCAAGGT 366784 29 100.0 32 ............................. TAACGTCTATTCGATATGAGATGCAGCGAGAT 366723 29 100.0 32 ............................. AGACCACCAAGCGCGGTTTCCAGCGCAAGATG 366662 29 100.0 32 ............................. TTTTTGAGTCCAGTACGAGTATCTTTATGAGT 366601 29 100.0 32 ............................. ATATGAAAGAGAGAAAAGAAAATGGTAAATCA 366540 29 100.0 32 ............................. ACCGGCTTGAGGGTGACGGGGATGTCGCCGTA 366479 29 100.0 32 ............................. CGCCGTGCGCCGGTCGCGGTCTGGTCTTGTCG 366418 29 100.0 32 ............................. GTGCCAAGCTGCGAGTCGAGCGCCTTGTTCAC 366357 29 100.0 32 ............................. ATGACGCTCAACGCGCCGGCGGCAAGCATCAA 366296 29 100.0 32 ............................. GCCCTCGCCCTCGATTATGACAGCTTCGACGA 366235 29 100.0 32 ............................. GCCCGAACACCCAGGAGTGCAGCCGGTCATTA 366174 29 100.0 32 ............................. AGTTCTATTCCTTCCTTGGTTGGCAATTCTTT 366113 29 100.0 32 ............................. CTAACGCGGCAATCCCGCTACCTTCTGATTGG 366052 29 100.0 32 ............................. GGGCGGTCTCTCAGATGGAGACCGACATCATG 365991 29 100.0 32 ............................. TCTCGTAGGTAAGTTGGTTCAATTTCACCTGC 365930 29 100.0 32 ............................. ACGCTTGCCGCCGACGATAGTCTGCAAGCGTG 365869 29 100.0 32 ............................. CGGCTGAATGATAATCTCACGTCTTTTTATCA 365808 29 100.0 32 ............................. GCTCACGCGGACTACATCCACATGATTTTCGG 365747 29 100.0 32 ............................. CGCCTTGCCGAAAGACTTCGCGCCACCATAGG 365686 29 96.6 32 ............................T GTCAGCATGACGTGCATCCAGTATTTGCGCCC 365625 29 100.0 32 ............................. AACGACAACGTTGCGCACGTGGTCGGCTCTTA 365564 29 100.0 32 ............................. CGCCACAAGTACTTGATGGCATTACCTGTGCA 365503 29 100.0 32 ............................. GCCGAAGAATAGTCTGAATGGTGGTGGCAAGA 365442 29 100.0 32 ............................. ATGATCCGATGACGGGTTACACGGTGTCGTGG 365381 29 100.0 32 ............................. GGCTGATGGATGGCAATGTTGGTTTGCGTCGG 365320 29 100.0 34 ............................. GCGATGCGTCGTGTGTTGCGGGGCACGCGGGCGG 365257 29 100.0 32 ............................. CGGGAAGGATAGGAAGGACGCGATAGACCGAT 365196 29 100.0 32 ............................. GAATACGCCACGGTCCAGCTCGAGAACGCTGA 365135 29 100.0 32 ............................. CGCATCAACATACTTCTTGAAGTCGAATTTTC 365074 29 100.0 32 ............................. AGTGGCACCGATGCTAAGCGCGGTTGGGTTTT 365013 29 100.0 32 ............................. GATTCGTAGAATCCTTCGACCGCCGTGTCATA 364952 29 100.0 32 ............................. AATTCGTTGAAATCTGACAACCTGCATACCGT 364891 29 96.6 32 ............................T TGTTCAGTTCGTCGGTGAGATAGCTCTCGAAA 364830 29 100.0 32 ............................. GGGTTGGTGTTCTCGTATCCGGCTTCATACCA 364769 29 100.0 32 ............................. GCTGTCGAACGCCTTAGCAAGCCATTGAATTC 364708 29 100.0 32 ............................. CGGCGGCTCCGCCCCAGTCACGTCCAATGGCT 364647 29 100.0 32 ............................. GGGTCGACGCCGTTGATGCTCTGCGGGGCGGC 364586 29 100.0 32 ............................. AACCATGTCGTGCAGGTCTTGCGGTTGACCTG 364525 29 100.0 32 ............................. GGATACGGAGCGTTGGGCGGTCGGCCGCCTGT 364464 29 100.0 32 ............................. GTCTTGCCGTCGGACGAATACCAGCGGCACTC 364403 29 100.0 32 ............................. CTGGACGGCCACACGTTCACCGCGTTGCGTCT 364342 29 100.0 32 ............................. GCCTTCTCACCCTTGTCGGTCAGCGCGTCGAA 364281 29 100.0 32 ............................. TCCAAGCCGGAACCCTTGCACACACTCATAGG 364220 29 100.0 32 ............................. ACGGGGAGCGGGCGAAAGTGTGGAAGGAGAAC 364159 29 100.0 32 ............................. TTCTGTGCACTTCATATTTAAAATTGTAAAAA 364098 29 100.0 32 ............................. ATGCTCATGGTCGGTGTCGGATTGAGTTCCGA 364037 29 100.0 32 ............................. GAGATGCGCCAAGCGGAGAACATGAACACGAT 363976 29 100.0 32 ............................. GCAACTTTAGTGTTGATTCCACCGTCAGAGGG 363915 29 100.0 32 ............................. GGTGCGGATAAATGCGACCGGCGCGGCGGCGG 363854 29 100.0 32 ............................. GAGAGTGAGTCGTGATACTATAAACTGCGTGG 363793 29 100.0 32 ............................. CATATTGCTATTGCAACAATGAATACCATCCA 363732 29 100.0 32 ............................. AATACAGTGCAGGGTACGCGAGACGTGGCCGG 363671 29 100.0 32 ............................. TCCACAGAGCGTCAAAAAAACCATACACATTA 363610 29 100.0 32 ............................. CCCTATTATCATCCATCACCCATTACCTCCAA 363549 29 100.0 32 ............................. GGCATGGACCCGCCCATCGCGGAACCGAACAC 363488 29 100.0 32 ............................. CGGCAGATTACGCTGCACGCCCCAATAAATGC 363427 29 100.0 32 ............................. ATCGACTTCCGGGATACTATCGTGGTTTCGGA 363366 29 100.0 32 ............................. TTTTCCGGTTCAATTACGTCGTTTGATTGCCA 363305 29 100.0 32 ............................. CTGCACATCGCGTCGCGCATAAAACAGTTCCT 363244 29 100.0 32 ............................. CAGTGCAGGACGTCGCACAGTATCGCCTTGCC 363183 29 100.0 32 ............................. GACTCTACAAGGAACAGCATGACGGTCACGTT 363122 29 100.0 32 ............................. GAGAGATTTAAAATCGTCGACGTTCGGTCACT 363061 29 100.0 32 ............................. TCCCCGCCCTTCAACACCTTGCCGTAGATCGC 363000 29 100.0 32 ............................. GCAAGGTATCCGACGCTGTGACAAAGCTAATT 362939 29 100.0 32 ............................. GACATGCACAGCAACATCCCACCGGCATTTGC 362878 29 100.0 32 ............................. ACGACCGATGCGACCGGCATCCGCGCCGATTC 362817 29 100.0 32 ............................. ACTCCACACGCTCGCCCGCATCCAACTGCCCG 362756 29 100.0 32 ............................. TTTTAGTATCGGATTGTGTATCAGTTTGTTGT 362695 29 96.6 32 .............G............... AGAAGGCCGCACGCTACCTCCTGCGCGCCACC 362634 29 96.6 32 ............................G CGCGACTCGACATCGACCACATCTACCGGACG 362573 29 96.6 32 ............................T GTGTGAGCGCATACTCGACCGCAGTCCAAAAA 362512 29 100.0 32 ............................. CCGCCTGGGTGGGGTCACGCCAGACCCGCACC 362451 29 100.0 32 ............................. CAAAAGAGTATCTATATGTACATTGAGTAACT 362390 29 100.0 32 ............................. ATCTGAGAGGCTGTTGAACCATGACATCAATC 362329 29 100.0 32 ............................. AGGCGCAGGACTGCGGGAACGAGTCGGTGAAG 362268 29 100.0 32 ............................. GTCTCGTCCGACGTGCGCGTATGGTGTGCCGT 362207 29 100.0 32 ............................. TACGAATCGGCGGGGCGAATATGCTTCACGTC 362146 29 96.6 32 ............................T GATCAACGTGAGTGAGCTTCAGCGACTCAGGT 362085 29 100.0 32 ............................. ATAGCCATTGTTACCCCTCTCACTGCCATTGA 362024 29 100.0 33 ............................. GGGTCATACTCCGAGGAAATCGACCGCGACCAA 361962 29 100.0 32 ............................. TCAATCACTGGTCATGGCCTAACGAGGAACGC 361901 29 96.6 32 .....T....................... CCAACGCAAGCACCGTCCGTCAGCACCAACCA 361840 29 100.0 32 ............................. TTTGGGGCGTGTACGGCAAGGTCTACGCGGAC 361779 29 100.0 32 ............................. GGACGTGATATAGCGCGACGCGATTCCGTCCT 361718 29 100.0 32 ............................. TGGTTGCGGTCGGCGTTCCGGTCGAGCGTATG 361657 29 100.0 34 ............................. GTGTACACGGTCTTGGTCAGCCCGTCGGCGCTGG 361594 29 100.0 32 ............................. GGGTTGTCGATCGTGGGGTACTTCGTGGAGAT 361533 29 93.1 30 ..........................TT. AATAACAATGCGAGTGGGTGCCCGGAAACC 361474 29 69.0 0 ..A...T..AT.T..A....A.....TA. | ========== ====== ====== ====== ============================= ================================== ================== 157 29 99.5 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : TGCAGTTCATGTAATCTTTGCACGTATGTTGTTTGATTCCATCGCATGGCAGATGGATATAAAGGTTTATATTGCCGGAACTATGTCAGTGCTGCCAGTGCTTTATTGTTCGCGCGACACGTACCACTTGTACGTGAATGGCACGTGCTGCTTGGCAGCAGACGCGCGTGGTTAATAACAATCTTCTACGCCTGCCCGTTGCTGGCTTTCGCATCCGTCATACGGTACGGGTGTGTGATTTTGACTTGTTCTTGTTGAACTGCCCAGACAGCGTGTAAATATACGATTGGCAACGGACGGGATTGTAGTCGACTGCGACCACAATCTGGTGGATTCCCTGCGCTTGTAAAGGCTTGTTGTTTATATCCTATCTGTGCTTGCAATTCTTGTTCTGACCACAACCGTAATTGAGATGCCATGCTTGCCTCTAGAAAAAGGAAAGTAAATAAAAAAGATGAATGATGATATAATGATCGGCGGGAATCTGCACTTTTCATAGT # Right flank : GTGATGGGCGTCGGCGTCAGTCCGACGGGCATGCTGGTGCTGGCATCGGCGGACACGGTGTTCACGAGTTAAGATGCATGTTTTCATCTTGCTGATGATGTCCAAAATTGGTTAGGATTGAGGGAAGTTCCCGCCGGTAGGTGCGACGGGAACTTTTTGCTTCCGACGTTGCGTTTTCCGGATTGGTCATGTGGAAGAAAGGACGACAATGGTCTGACTGGTTGGCAAAGGCCTTAAGAATCTGGAGAATGATATCGAGCTGAAATCGCTTCAAGAGCGTTCAAGCAAGGACGCGGCGGACGGCTACATAAAGAACACGTTGAAGAAACGGGATGCGGTTCGCGTCGTATCCGATAATTCCTCCAACACTGGCATGCCGGATGATGAATTAATAGGGTATCTCCGCAGATTGTCGGCTTTCAAACGTGTAGTGGCGTACGTCATCGGCGGGCTACTGGTGACGGTATCGCCATTTCCAGCAAGTTGGCCGATTGGTCAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //