Array 1 38167-37836 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYSI01000018.1 Plesiomonas shigelloides strain FM82 NODE_18_length_69914_cov_42.214704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 38166 38 100.0 35 ...................................... AGATGAACGCTGTTCATCGTTCATTTCATTGAAAA 38093 38 100.0 35 ...................................... TGCTAGACGACGACAGGAGTACCCGTAACTGTCAG 38020 38 100.0 35 ...................................... TTTGACCGGATGCATCGATACCACTCACAGTTGGT 37947 38 100.0 36 ...................................... ACGGAATCGTCACGCATCGGCAGCGCGGGTGCAGTG 37873 38 89.5 0 .................................TT.TG | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 97.9 36 GTCCTACTGGACATTGCCCTGACTGAAGGGATTAAGAC # Left flank : TAGGTAAACAAACATACGTTGTCCCTTGGTTGGTGATACCACAACCTCGAGAGGATGAGTCTGCGGTATAGCTAAACGGCGCTTCCCGGCCGTTGATCATACAAATGGTGATGCAGTGTCATATTATAATGAATTGATTTCATTTAAGAATGCAAAAAAAATGAGAAATCAGTGCTCCTCCTAAAAATTTTTATTTTGTAACCAGCAGGATACGGGCAAAGAATGTCGCTGACGGCTTCACCAATTGGTGAGCATGAGGGTATAGATTCGGTGCAATGCGTGGCAGAGATCAGAAAGGCATTCAGGTTGTTATGCCGACCATAATGCCGTGTTGCATGGTGCAAAAGATTAAATTTAAAAATCAATATTAAACAATACGTTATATTTTTAATTTTGAGTATGGCATGCTCTATGCTTTAATTAACAAATTATGCACTGTTTAAAACAGGCGAAATGTGGATAACTTGCAATAATAAAAACAATGGGTTATAAACGCACTT # Right flank : TTTTGCTTTACCTAACCGCGATCATTTCTTTTTCTTTCCCCCTCATCCCACGCATATCCCACACATAGCGAAAGCACCACCACCTGCCGACCAATTGGTCAGCGCATCATGCGTCATTCTTCTCGTTACTATGGCTTCATTCCAACACACGAGGAGAATCACCATGGCACAGAGTAACTTTGCGGATGAACTCTGCGATGCTATCCAGCAAGAAACCAAACTGGATGAACAATCCAAAAATTCCCTGTTGCGCCGCTTGGCTGCATTGAAAAAAACCAAGGTCAACATACTGATTACCGGGGCGACAGGTTGCGGCAAGTCTTCCACTATCAATGCTCTGTTTGATACGGATAAGGCGAAGGTCGGGCAGGGAGTTGATCCAGAAACGATGGATATCGCCAAATACGAGCTGGATAACATCGTACTGTTTGATAGCCCAGGATTAGGTGATGGTAAAGAAGCCGATCTGCGCCATGCGCGCAATATTACCGATAAGCTGT # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTACTGGACATTGCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [9,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 48541-47928 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYSI01000018.1 Plesiomonas shigelloides strain FM82 NODE_18_length_69914_cov_42.214704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 48540 38 100.0 34 ...................................... TTATCATAAAGCTCCCAATCACCTTCTTTAACGT 48468 38 100.0 34 ...................................... ACTACTAAGAAGTGTCATCTGCGTTCTATCATCC 48396 38 100.0 35 ...................................... TCTACGATTGGATCAATTGCGTTCAGAGTAGATTC 48323 38 100.0 34 ...................................... TTATCCATGGACTCGGTGCCGAAATACAGATCTT 48251 38 100.0 33 ...................................... GATAGCTGAGCTGTGCTCTTCGCTAACGTACAG 48180 38 100.0 34 ...................................... AACACGTTTTTGTCATTGAGGAGGCTGGTATTGG 48108 38 100.0 34 ...................................... CGTTACGGATTGGCAAGCCAGCGTAACCGATTAC 48036 38 100.0 33 ...................................... CGATGTGGTAGAAGAATCAGACATGGCATCCAA 47965 38 97.4 0 .....................................G | ========== ====== ====== ====== ====================================== =================================== ================== 9 38 99.7 34 GTCCTACTGGACATCGCCCTGACTGAAGGGATTAAGAC # Left flank : TGGTATACGCTTTGGAGCCACTTACCATATGCTTTGAAATCGGTGTTTATTACGACATTTGGTGAGGGGTTGATAAGTTCTGAGTTGCGAATGCCATTAACTCAGGTGGCGGCAGTTTTAAAAGATTATGCATATGGAGTTGCTAAAACACACCATACCAATGAATTGTGGCCAAAACAGGCAAAACAATCGAAAAAGTAACAAGCAAGCCAGCAAGTAGTAAGCGCATCATCGCGCGCCATGCCTAGTAGGAATATACCCGCTAGTAATTGTTATTCTTAGCCCTCGGTAGTCACGTGATGTCCACGTGACTACCGAGGATTTTCATTTTTTGGAGGCATAAAATCAGAGCGAAAATAAAATCATATCATTTAACTGGTTAAAAGTAGTTATATCAATCTGGCATGCTTTCTGCTTTATTTAATAAAATCACCGCTGTTTAAAACAGGCCAAATGTGGATAACTTGCAATAATAAAAACAATGAGTTATAAACGTACTT # Right flank : ATGTATAACACTACGGCAGCGTAATCTTTCTTTAATGACCGTAGTCACAGGATTGCAAGACAGTAGGGTTTCAAGGTGATTAGGTGTGAAGCAAAATAAAAATGACGCACTCCGTTGAAAGAGGCGTCATTTTTTGTTTTTGCGAATGGCATCAAGTCATGATGACTTGTGCTTTTAGTTATAAGCAACCCCGTTAGGCAATCAACTGATATTGCCCTAAGCCAAACGTGGTTTTACCGCCGATGTGTAGCCGCTCGCCAATCTGTAACCAAAACAGAGCGGGTGCGATATCCCCTTGATAGCAGAGCTGACCGGTCAAACCGCCAAACGGTAAGTGTTCTTTTTGCCGCACCGAGTAACGTTGCCAATCCTCCACTCGCAAACAGGTTCCGTGAGTTTGATGATCGCCTAAGTGTGGTAGCGCCTGTTGTAGCAATGTGCGCCAGTGTGGCTGGTCATCAACCCAAAAATGCGTGAGTAAACTCCAGCGGCGGGCAATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTACTGGACATCGCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 54081-53828 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYSI01000018.1 Plesiomonas shigelloides strain FM82 NODE_18_length_69914_cov_42.214704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 54080 38 100.0 34 ...................................... TGCAGAATGCTGCAAAGAAAGCAACCAAGATTGG 54008 38 100.0 33 ...................................... AGAGGGAAACCTTTCCTATCACTTAACTTTTAA 53937 38 100.0 34 ...................................... CGCCTAGACTTTCCAAATCGCTCTTCAGATCATC 53865 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ================================== ================== 4 38 100.0 34 GTCCTACTGGACATCGCCCTGACTGAAGGGATTAAGAC # Left flank : TAATTAGCTATGACATCAGTTGCCCACGCCGTTTACGGCGGATCCAAAAATATTGTGCTGCACATGGCTGGGCATTACAAAAATCGTTGTATGTGTTCGCACTTGATCGCAAAGAGCGCCTAGAAACCTGTGCTGAATTAACGGCCATGCTTGAGCAAGAAGAGGATCGGTTATTGTGTTTACCCTTCAGCACGCCAGAGGGCAGTTTTCACTTAACGCCCATCAGCGATATTGTCTTGGTGCACGATGACCCGCGTCTTGATGGTTTTGTTTTTTGATGTGATAGCATTTTGCGGTAATAGCGCCTGTACTTGCACATAGAAAGCCGCGGAAGCGGCTTTTTTTACACCAAAATAAAAGAATAAATTAATCATGATGTTACGTGACGGCCATATTGTGTTGGCACGCTTACTGCTTTATTTAACAAAATCACCCCTGTTTAAAACAGGCCAAATGTGGATAACTTGCAATAATAAAAACAATGAGTTATAAACGTACCA # Right flank : GTCATCATTCATTACTCGACATTGCTAAAAGGGGTATTTGTTTGTATTTAATCGCAAAAATCGGTTAAAAAACGGTTGTGCGTTAACCGCTTTGCCTGATCCTGATTAAGAGCAAGATTAATTAGGGTGTTTACTCTTTCGTTAGCCGAAGATAATTTTCATTTGCCGGCTATTTGTTTGATGAGCATTACGGCACAATGCTGCGCACTTTAATGTAATCAAAAGTGAAAAAAAACCGCATAAGCGGCTTTTTTACAACGAGAACGAAGAAGAAGGAATCAGAACTGTTCTGCCAGATTGAGTTCAGGATCTTTAGGACAAAGATTACTGCTTACATTTAAACCCCATAACTCTGATGTGGTAATGATGTAGTCATCACCATTATGAGTTCCTTTCTTAATGTCATCCTTATTTAAGGATACAGGGCGTCTTCTATTTCCTTTGTCTTCTTTTATTGTTTTATTCGTTTTTTGACCAGTGATTTCTTCATAATTAAGAAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTACTGGACATCGCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 4 60089-59186 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYSI01000018.1 Plesiomonas shigelloides strain FM82 NODE_18_length_69914_cov_42.214704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 60088 38 100.0 34 ...................................... CTTTGGCTTTCGGTTCTGATACTTTTGCTTTAGG 60016 38 100.0 34 ...................................... ACAAAATGTTCGCCATGCGCCCCCACTACTTCCA 59944 38 100.0 34 ...................................... TTTAAGGATTTTGCCGATCACCTCACCAGCCTGT 59872 38 100.0 34 ...................................... GCGACCCCATGTTATAGGTCATTTTGCATGTTTC 59800 38 100.0 34 ...................................... TGTACAGTGGCGATGATACCAGTTTTCAAGCATT 59728 38 100.0 34 ...................................... TTGTCGTCATGCATTGTAACTTTGTTAACAATAC 59656 38 100.0 34 ...................................... AGAAGTCGCCCCATTTTTAAACCAGTGGTTTATG 59584 38 100.0 33 ...................................... TTCGGCCCAAACATCACCCAGCATGGTACCGCG 59513 38 97.4 34 ...........T.......................... GATACTCCATTGTCGCTGATGCCAGATTGACTGC 59441 38 100.0 34 ...................................... CCATACAACGCCATATACTCTTCATGATCAATTC 59369 38 100.0 35 ...................................... TAGAGGTCATTACCCACAAAGTAGGCATCGCCAAA 59296 38 100.0 34 ...................................... TAAAGAGTTCGATGTTCGTGTAACAATCGAATTG 59224 38 97.4 0 ....................................C. | A [59192] ========== ====== ====== ====== ====================================== =================================== ================== 13 38 99.6 34 GTCCTACTGGACATCGCCCTGACTGAAGGGATTAAGAC # Left flank : AGATGGTGCTGCGTAACGTTGCCTTGAAGACAACAGCAAACTCATTATTCGCAAGCGGCACTGGTGTCACGAGCGGTGTCACGGCAGGGCTAACCGCTTCAGGCTCTGGCAGTATATTGACTACCTCCGCCTTGGCAGCCAGTGCAGCTGGGGTCTCAACCTTGTTGACGCCGGTGGGGATTGGTCTGGCGGTAGGTCTTGGCGTGACGGCATTATACCGTTGGTTAAGTGATGATTGATTGGCATAGGTCATCTTGCATTTATGGCCTTTGGCGAGTGCATAGGCCGCTGCCAAAGGCCAATGAGTGTAAAAATGACCGATGCGGGTGTGGGGCACAAAAAACAAACGAAAAAATTTAAGTTGTTATTATTCAATAGGATAAGTTGTCTAATTTGATATTGGCATGAGAGATGCTTTATTTGGCAATTTATCCACCGTTTAAAACGGGCCGAATGTGGATAACTTGCAATAACAAAAACAATGAGTTATAAACGCACTT # Right flank : TATGGCATACAGCGTGTATGCCTAGTGTGCTTTTCTTTCTTACATCGCCCTTCTGTTTTTTACCTACCTCTTTGTATTTCTAAGACTTTTCTTGCCAATTGGTCAGAAATTCTTAACGCCCCACTTCCCGTATTCTGTGCTCATCGAATCACGCAGGAGCACAGTGATGCAGCAACTTTCCTTAGATTACATCCGCCAAATTGTACCGGCTTGGTTAGCCGCCGGCGGCAGTGGCAAAATTGAATTAGCAGCCCTAGAGCCGCTGTTATGGCGTGATGGACCAACGCGCTTGCCTGAGCTGGTGGCAGAGTTAAAAGCCTTAGGCTGCCATATTTCGCTGACCACTAACGGCAGCCTATTAGCCCCGTCGGCGAAACCTTTACAGCAAGCCGGTGTTGATCTGGTACGCCTTAGCTGGCACACCTTAAATGCCGATACCTTTCGCCAAATTACAGGGCAAGATGCCTACCCACGTTTTATGCAGGGGCTTGAGGCCGCCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTACTGGACATCGCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //