Array 1 28773-27462 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSXK01000046.1 Escherichia coli strain IH23c NODE_46_length_37456_cov_18.112888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28772 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 28711 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 28650 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 28588 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 28527 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 28466 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 28405 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 28344 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 28283 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 28222 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 28161 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 28100 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 28039 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 27978 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 27917 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 27856 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 27795 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 27734 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 27673 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 27612 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 27551 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 27490 28 72.4 0 .AA........C..T....T-.G.....C | C [27465] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 805-166 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSXK01000015.1 Escherichia coli strain IH23c NODE_15_length_87470_cov_19.783841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 804 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 743 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 682 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 621 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 560 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 499 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 438 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 377 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 316 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 255 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 194 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //