Array 1 27719-27182 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV818696.1 Enterococcus sp. HMSC066C04 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 27718 24 100.0 41 ........................ CACAGGATTGGTCTTGATGCTTGTTTTGAAACAAAAATCTG 27653 24 100.0 40 ........................ AATTCTCCATCGATTCGAATATAGCGGGGTTCTCTATCTA 27589 24 100.0 41 ........................ GTTGATGTTCCAAATGAGGCATATCATGGAAGCGATATCTA 27524 24 100.0 40 ........................ ATTTCAAAAACTATAAAAGTGAATGATAGAAACTAATCAA 27460 24 100.0 41 ........................ ACAGCAGTAGAAGAGAAACTCATTGATATCAAGTTCATCAA 27395 24 100.0 40 ........................ CAAGTAATTGTTCCAAGGATCGGAATTTTAACAAGATCTG 27331 24 100.0 38 ........................ GTCATTGCCGTAGAGAAAGTATTTCCTGGGGCTTATCT 27269 24 95.8 41 ...T.................... TTCCCTGACGCTTCAACACCTACGCCTAGCCCAGGCATCTA 27204 23 75.0 0 .........C.A..-....G..CG | ========== ====== ====== ====== ======================== ========================================= ================== 9 24 96.8 40 AATCTAAAATAGTGGAATGTAAAT # Left flank : CAAATCTTGCTGCTTTTCACTTAACAAACTATATTCTTCTCGAAGTTGAGCAAGTAGATATAGATGATTTAGAAGGAGAGTTGTATGAAGTGTCTGCAGAATGTCGCTACGTTTGGGAAGCGATCCTTGAGAAAGCGACCATACAAGAAAAAGAGACAATGTTTACTTGGTTTAAAAATCAGCTTAAACATTCTAACTATGGGTTAAGTTATAGTGAAATTGAACAAATTTGTGAGGAATATTTTTAAGGGATAGAGTTTATGAGAGGGTAGGAGTGGATTCTGCTGATAAATCAAATATTCATCAAGAATTTCTAGTAAAAAGCTTAGTACAAGTGAACCAATCACAATTAAATTGACGCTATTTTTTTTGGGGGATCTGTCGACCTCAAAAAATCAGAAATTTCTGTAGTTGCGACTGCAGCATGAAAATGTTGAATTCTAAGGATTTTCTGTTAAGAATACTGTTATTTTTGTTGAGTGATGATGTAATAAAATCTG # Right flank : CAAATTATGTTATCACACAACCAATTCACCCAGAAAATTTCTCCAATTCCAAAGCACTAACCTCATAAAAAATCTACAGCCACCATCGCAAAAACACTTTTACCAGCTGGAGAGTGTTTTTTTGTCTCTTTATTTATTCCTAAACTCTGAAACTTTCATCCGAAACGTGGGTGATCTTTGCTAAAATTAAGAATAAAACCATTATTTTTATAAGGAGAAGACCGATGCAGGAGAAAATAAAGGTATTGATCATTGATGATGATCAAGAGCTGTGCTCGATTATTGAACGGTATTTGACGCGTGCTGAGTATGAGGCGGCGTTTGCTCATACGGGTGCGGGCGGATTGAAAATGGCCTTAACAGGGGAGTATCACTTGATCGTATTGGATATTATGCTGCCGCAAATTGACGGGTTGAGCATTCTAACAGAGATTCGCAAGGAGAGTGTGGTGCCGGTCTTGATGTTGACAGCAAAGAACGAGGAGGCGGATAAGATTCGC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 30358-29404 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV818696.1 Enterococcus sp. HMSC066C04 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 30357 30 100.0 34 .............................. GTCTTCGTGCTGCTGAACCTGTGCTTCTAACTCC 30293 30 100.0 36 .............................. CAAGCCAATTCCGACATTGTTTCTGTTGCAAAAAGC 30227 30 100.0 38 .............................. GCATTTGATTATGCAAAGGTAAATCGCTTATTGCAAAT 30159 30 100.0 34 .............................. TTTGATAGTTTAGGTTATTTATTAGAAACAAATA 30095 30 100.0 36 .............................. ATTGCTCGCCCAGATGTTAAAAAGGCATTTGGACTT 30029 30 100.0 36 .............................. TTGGCACACGACAGGCGATAGACCTGATGGAGCAAA 29963 30 100.0 37 .............................. GTTAGTTCTCTAACCATTTGATCAATGGTCCACATTT 29896 30 100.0 36 .............................. GATCGAAAACAGTTATTAGCTTTTCAAATTACCCAG 29830 30 100.0 36 .............................. AAAGCTGTATTGACACCCCCTGTTAAAGCGCCACCT 29764 30 100.0 37 .............................. GCGATTACAGAAGTTGTCGATACTGACAATGAAGAAA 29697 30 100.0 36 .............................. CCTTGCAAGTAACAACTGAAAAACTAAAAGGAGCTG 29631 30 100.0 37 .............................. CCCACATGGTCGCTAAAAATACAAACAATATCCCCCG 29564 30 96.7 36 .......C...................... GAGCGCCGAAGACGAGTACCAACTTGATCCGCCATT 29498 30 100.0 36 .............................. TTCATATCCCGAAGGTCATGCTCTGCTTCTCTCATT 29432 29 90.0 0 ......................-.A...T. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.1 36 GTTCAAATCTAAAAATAGTGGAATGTAAAT # Left flank : TATGAACCTTTCAAAATTTGGTGGTGAAAATAATGTATGTCATTTTAGTTTATGATATTTCTTTAGAAGAAAAAGGCGCTCGTGTTTTGAACCGAGTATTTAAAATTTGTAAAAAATACCTAAGTCATGTGCAAAAATCCGTGTTTGAAGGGGAGATCACTCCTGCAAAGCTGAAAAAATTAGAACAAGAACTAAAAGAGTACGTTCGCGAAGACTTGGATTCAGTTTTAATCTTCAAAAATTCAAATAAGAAGTGGTTAAAAAAGGAATACATCGGAATTGACGGATCAGAACTAGTTTCGAATTTCTTTTAAGTTTTAAATCTGTCGATAGAGAATACCTTAAAAAACCGGTAGTTACGACAGACGATAGAGAATGTTGTGAATATAAGGTTCTTTTTGTTATCCAGTGTTATTTAATTTTAAAAAGGAAGTCATTTCTATGAGGTCGACAGAAATGAGTGAAAGAAGCCCTCTATTTCAATGTATAATAGTTGTGGG # Right flank : TTGGGTAACTAGAAAAATTCCAACTGCGAGTTAGATATCTAAAATAAGAAATTAATTTAAGAGGTAATTGAATATAAAAAAGCATAGTACATTATTGAATTTAAGAGGGTGAGAAGAGATGAAAATCTATACGATTCAACGGAGAGATTTTCTGACATATACTGATTCACAAGGATTTATAATTCCTAAAAGAGATCCAGAATACTCTATCTTTACGGATGACGAAGAAGGGGAAAATTGTCTGTGAGCATTAGAATGGATGAAAAGGCAATTTATAAAACGGATGGACATACCTTTAGATCGTGATTTAATCTGGGTTTGGCCGGATATCTATGCGTATCTTTCAGAAAAAAATGACATTGATTTTTCGAGACATGCTCTTTTCACCTTTGAAGTCCCTGCAGCTTACTACAAAAAAATGATTTTATGGTCCAATTTTATTAGTTGGCATGAGGTCTTGAACCGGTTATGGGAAGGAGTCGCAGATGAGGACGAACGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTAAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //