Array 1 23056-29323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQFL01000020.1 Pseudoalteromonas sp. ND6B ctg28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23056 28 100.0 32 ............................ TATCTGTGCCATTGACTCCACATCTTTATCCA 23116 28 100.0 32 ............................ AGAGTTGCGGAATATCAATCCACGAGCTTTAC 23176 28 100.0 32 ............................ AACCTGTGCTGAGCCTCTACGTTACCCAAAGA 23236 28 100.0 32 ............................ TGAGCATGCTGAGCTTATTAATTCACTATCAT 23296 28 100.0 32 ............................ ACTCCAAACTGCCGATACTTTGACGGTAAAAC 23356 28 100.0 32 ............................ ATTGTGAGTTAGCGTAAACTGACCATCACCGA 23416 28 100.0 32 ............................ GTTACAGAAACGCGAAGCGGTACAGTTTCACC 23476 28 100.0 32 ............................ ATTAACGTTAAGCCGGTAAAGTCGCGGCCAGC 23536 28 100.0 32 ............................ TTACCCGTTCCATAAACAGTATTGCCTATAAT 23596 28 100.0 32 ............................ GGGATGATTGAAAAATCGCGCAATTGGTCAAT 23656 28 100.0 32 ............................ CCGTTGTGATGTCGGTGATCACGGTTGCAACG 23716 28 100.0 32 ............................ TAGAGGCGTTAGAAATATGAACCTAATCGACA 23776 28 100.0 32 ............................ AGCGCGGGTTGTTTCGGCTTGGTCGCGGCGTT 23836 28 100.0 32 ............................ TTCTGCACAAACTACCGTTAACGACTGACCAT 23896 28 100.0 32 ............................ TGGCATGTGGGGTGCGTCTGCTTCACGCTTAC 23956 28 100.0 32 ............................ ATTGGCATAGGTTTTCGTAAAGCCTAATTGTG 24016 28 100.0 32 ............................ TTTGAAGGCAGCCCGTACTGCTTAGCATATCC 24076 28 100.0 32 ............................ TTTAGCTCTAAACTCGTTAGCCGCTCTTAATT 24136 28 100.0 32 ............................ TTGTTTGCGCAAGTATTTTAACCGTGCATCGC 24196 28 100.0 32 ............................ CATATTGTCGGTTAATGCATTTCTAAACTCTT 24256 28 100.0 32 ............................ ATCAGTTCAATTTGTATAGATTTAGAGTAAGC 24316 28 100.0 32 ............................ ACACATAATCCCCGCTTAAATCAACGGTCATG 24376 28 100.0 32 ............................ CTAAAACCCCCGAGCAACAACGCCACATTGCA 24436 28 100.0 32 ............................ TGATGATGAAAATAACCCAACCATGCTAACAG 24496 28 100.0 32 ............................ GTTAATTGGTTTATATCCACACCGAGCGCAAA 24556 28 100.0 32 ............................ GATTCAAGGTGCTGGTAAGTTTGGCGACCGTC 24616 28 100.0 32 ............................ TAACGGTAAGTTGCGGGTGCTGCGCGAGCTAA 24676 28 100.0 32 ............................ GCAAATTAATACGGTGGGTTAGCTTACTCTAA 24736 28 100.0 32 ............................ TACCTACACCTTTAAAGGCGATAAGGTTGATG 24796 28 100.0 32 ............................ GATGAACAAATTGAAGCGGCATTGATTGAAAG 24856 28 100.0 32 ............................ AACATGAACAACAGAAACAAACTGCTGGCTGA 24916 28 100.0 32 ............................ AGAATAAAACTGAATAACAGATTAATGCCATT 24976 28 100.0 32 ............................ TACACGAAAAATGAAAAGGTGGCAGCGGGTTG 25036 28 100.0 32 ............................ TTTGTAGCGGGTAGTAAAAACCGCTCAATGCG 25096 28 100.0 32 ............................ TTGCAGTGCATCTTTGACAACTTGAGTTTCTG 25156 28 100.0 32 ............................ GCTGTAGATGCTGGGTTGCGGTTGCCAACTAA 25216 28 100.0 32 ............................ TTGTCGGGGACGGTAGCGAGTTGATCCGAACT 25276 28 100.0 32 ............................ AATTGGATAAATCTAAAGCTGGCGAGATTGCA 25336 28 100.0 32 ............................ TGACAAGTGGTACAACTACAACTCAGCTATTA 25396 28 100.0 32 ............................ GTTTTATGGTGTTGCGGGGTCCGACTTGATCT 25456 28 100.0 32 ............................ AAGCAAGATAAGCTTAGCCAGCTAACGGCGGC 25516 28 100.0 32 ............................ AATACCAGAGCGAGTGAATGAATCCTTAATGT 25576 28 100.0 32 ............................ TACGGCGAAGTGGTATCGCCTGAGCATGCTGA 25636 28 100.0 32 ............................ TTGCAACCAATTCAACCGAGGCCGATGCACTG 25696 28 100.0 32 ............................ ACCAAATTGATGAATAGCGCCGTACTCCATGT 25756 28 100.0 32 ............................ TGCAGCCTTTGGTGTGTAAGGGCTGCAGCGCC 25816 28 100.0 32 ............................ AGACGGAAGTCCAAGAGCTAGAATTTACAAGA 25876 28 100.0 32 ............................ CAGCACTTACCAATGCACTCACCAACGCCATA 25936 28 100.0 32 ............................ TTTAAAGAAAGGTAATATGCCGCCTCGCTTAT 25996 28 100.0 32 ............................ ATGAAAAAACCATTTACCAAACAAAGCTTACT 26056 28 100.0 32 ............................ ACTTGTGAAAAATTACAAAGTGCTGGTTTTTG 26116 28 100.0 32 ............................ AAAGACACAAACACAGCGCAGATCAAAAAAGC 26176 28 100.0 32 ............................ AGAACTGCGCCATTGGCAAAGGTTTTCGCAAA 26236 28 100.0 32 ............................ ACAAAGCTTTAGACGAGGTGTGAAATGATACA 26296 28 100.0 32 ............................ TCATCATAAGCGAATGGTTTAAACTGCTGCTC 26356 28 100.0 32 ............................ TGATAAGTGGTATAACTACAACTCAGCTATTA 26416 28 100.0 32 ............................ AAGCGCCCCGCACTAGCACGACTTTTAAAACG 26476 28 100.0 32 ............................ AACATGACCGAGTTAGACGCGCTAATAGAAGC 26536 28 100.0 32 ............................ ATGAGTACATACGCAATAATACCGCAAGAGCA 26596 28 100.0 32 ............................ CCAATCGCTTGAGTTTTGGCTTACAGCATCAA 26656 28 100.0 32 ............................ TACCTCTAGACCAATAGTTGCAACTAAGTCCG 26716 28 100.0 32 ............................ GTAACCTATTACGGAGCCGCCAACAAATACGA 26776 28 100.0 32 ............................ TGTAACAGAGCGCGGTATCTACATTTTATCTG 26836 28 100.0 32 ............................ GTACAAACCTAAGCATGTGCCGACATATAAAG 26896 28 100.0 32 ............................ GTGACCCGCGTGAAGCTGGCCGTTTATTCGGT 26956 28 100.0 32 ............................ TGATTAGTTGACGATGGTGAAACCGTTGAATA 27016 28 100.0 32 ............................ TAAGCGAAGAAAACGCTAAGCAGATTCTTAAA 27076 28 100.0 32 ............................ GTTGCAGCAATGGATGATGCGGACGTTAATTA 27136 28 100.0 32 ............................ TTCTGGTGTTGTATAGGCTGAAACCCTATTGA 27196 28 100.0 32 ............................ TTCACGATTGATGCGCTCACGCAGCCATTTAG 27256 28 100.0 32 ............................ CACAAGAAAACCTAGGTGAAGCGCCTAAGCAC 27316 28 100.0 32 ............................ ATCACTAAAAACCCGCTGCAAATAGGCGGCAA 27376 28 100.0 32 ............................ TTACTAAGGGGTTGGGTGGGTTGCGCCCTTAC 27436 28 100.0 32 ............................ GTACTCGATACCATCACGCGCCAATTCCTTAC 27496 28 96.4 32 ...T........................ GCTGACGCTGACATTGATGTGCAATTACTTAT 27556 28 100.0 32 ............................ AACATGCAAATAAGTGACGGCGCCAATAGTGC 27616 28 100.0 32 ............................ ATTCAGAAAAAACAACGCCTCTTGGGTTTGCA 27676 28 100.0 32 ............................ TAGCGCTTTAGCTATTGCTATGGCATCGTCTT 27736 28 100.0 32 ............................ ACGGTACTTCGCTGCCTGTGGGTATGCCTAGC 27796 28 100.0 32 ............................ GTACGCGGCGCTTGCTGCCATACTGCCTACAA 27856 28 100.0 32 ............................ ACAATTACGAAACAGAAAGCGGGATTTGTATT 27916 28 100.0 32 ............................ TTTAGTGTGCTCTATATATGGCAAATCACTAG 27976 28 100.0 32 ............................ TCATCATAAGCGAATGGCTTAAACTGCTGCTC 28036 28 100.0 32 ............................ AAGAAGGTAAATAAAGATGGCAACTACAGGTA 28096 28 100.0 32 ............................ AAAGAGCTAAACGGGACGAACTTCCGTGGCAA 28156 28 100.0 32 ............................ ATGGTGTCGGTCTCCGTTGATTTAAAAGTTTA 28216 28 100.0 32 ............................ AATCGAGCAACGGCAATGTGTTTGCCGTTGTT 28276 28 100.0 32 ............................ TGGTTGGTTACTTCTTGAATTACGTGCTTTGT 28336 28 100.0 32 ............................ AATAATGGTGAAAGATGGTGCTGGCGTTGTTG 28396 28 100.0 32 ............................ AACATCAACTGATACAGGCTTTTCTTTTTTTA 28456 28 100.0 32 ............................ GACGACGTATATCGACAGTTCAAAAGCGACGC 28516 28 100.0 32 ............................ TGCTCTAGTGCGTTTTCTTTCACGTCTTTAGC 28576 28 100.0 32 ............................ TGCTGCGATACAGGTTGACGCTTAAGTACATC 28636 28 100.0 32 ............................ ATTTGCTGTAGAGTTAAAGGGTTGCCCATATT 28696 28 100.0 32 ............................ GTCTAAGTCTTTAAAGCTTGCAACAACACTAC 28756 28 100.0 31 ............................ AAACAGTAACGACAAAATGTCGGGGTTAAAA T [28781] 28816 28 100.0 32 ............................ ACTATAAACCTTGCACCCACTGCCATGCTTAA 28876 28 100.0 32 ............................ GCCTCACCGTTGTGACTCGCAAAAGTTTGAAG 28936 28 100.0 32 ............................ AACTTTACGCATTTGTAACAGCAATGGGCTGG 28996 28 100.0 32 ............................ GTGACGGGCGAGTAAAAGCGTTTGATGAAAAG 29056 28 100.0 32 ............................ CCCATCAGCCACACATTGCACAGCATCGTTAC 29116 28 100.0 32 ............................ ATGCAAAAAAAACACAATTCAAAATACCAAGA 29176 28 100.0 32 ............................ CCGCAACTATTCTGGTCGGTGTAGTAGGATTT 29236 28 100.0 32 ............................ ATCGTCCAGCGGTCGAGGACTCCGGCCTTTAA 29296 28 89.3 0 ..........A.G.......A....... | ========== ====== ====== ====== ============================ ================================ ================== 105 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGCTGGTGTAACTTATGTATGTTTTAAGCGTACACATGTTAAATCGGCTGAGCGTATAGACCGGGATATGCAAGAAAAAGCAAAGCGCTGGGCTAACAAAAGTGGTCAATCTTTAGCACAATGTTTAATTGAGCTTGAAAAGACCAAACCAGTAGGGCACAGCAAGCTACCGTTTATCTTTTTACATAGCCAAGAAACTAAGCGTCGTTCGCCCAATCAAAGTAGTAAATTCCCTCTGTTTATTTCTAGAGTAAAAGTCAATAGTTCTCAAAATGGCACATTTGACAGCTATGGACTCAGTGCAAAATCGAATGATGAAAATAAATTGGGCTGCGTACCTCAATTTTAATCTATGAAGGGTGTTGTTCACCCTTTATTTTTGCTCTTTAAAAATATGATATAAAAACAGCAAGTTACAATAGTTAGCTTTTTATAAGGTAAAATTAGCATATTTACCCTTACGGCCTGTTGTAACTTATTTTTATGCTGATATTCTATA # Right flank : AACAGTAACAAGCGGTGGTTTTTATTGCCTAGAATATTGTCTTAAAGTTAAAGGACAAAGAGATAGTTTTAAAAATAGTACAATGAGCTTTTAATTATTGTCGCACTTTTGATAGGCAAAAATTTGTGCAGCAAAGTTAGTTTAGTACGTACTTAAAATTTGCTTAAAAAAATGAAAAATGGGAACATAAAGGTCTATACAGAAACTTATAAGGAAATATTTAATGTATGCAATGCCAACTCGCCCCGAAAAGCCTTCTGCTCAAGACTTACAACTTTACAATTTTGAATTACTTGCTAGGAAACACTATCAAAAGCTTTTAAAAAAGAGTCCAAATTGTGCGGACACACAAAAAGCTATGGCGAATGATATAGCTCATTTAAAAAAGGAAAGAGAAAAAATCTTAAGGCCTGCAGAGGCAAGGGCTATATTAGCTTCTTATAGAGCTAACAGTGAAAGTACGAGTATTGAAGACAAAATGGGAGAGAAATATCGCCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //