Array 1 108281-107580 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMDS01000002.1 Escherichia coli strain A114 A_114_000000000-B8CVN_L001_R1_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108280 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 108219 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 108158 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108097 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108036 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 107975 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 107914 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 107853 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 107792 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 107730 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107669 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 107608 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125580-123782 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMDS01000002.1 Escherichia coli strain A114 A_114_000000000-B8CVN_L001_R1_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125579 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 125518 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 125457 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125396 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 125335 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 125274 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125213 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 125152 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 125091 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 125030 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 124969 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 124908 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 124847 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 124786 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 124725 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 124664 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 124603 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 124542 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 124481 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 124420 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 124359 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 124298 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 124237 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 124176 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 124115 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 124054 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 123993 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 123932 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 123871 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 123810 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCTAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //