Array 1 32939-31763 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJRAY010000024.1 Thermobacillus xylanilyticus strain XE, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 32938 33 100.0 33 ................................. CGGCGGACATTTAGGAATGAGGGGGTAAGCATA 32872 33 97.0 34 ................................C GTTCAGTCTCAGAGGGGATCATTCATCCAGTATG 32805 33 100.0 34 ................................. GCGGTGGGTGGATACGCAGGCGAAGGCGTTCGGG 32738 33 97.0 34 ................................G CGGACGTGCTTAAAACGTACTTGCAAGGGGGAGA 32671 33 100.0 34 ................................. CACCTTCCCAGGCTCCTTGCCAGTCGCCGGTGAA 32604 33 100.0 33 ................................. CGTCCACCCGGCTCGGACGCATCCCCGGCGACG 32538 33 97.0 33 ................................C GGGTTATGGTTTCTTGCGCCGATCCGTGGATGA 32472 33 100.0 38 ................................. AGATCAACCCGGACCCGGTGGAACCGTGGCGCGGTCGC 32401 33 97.0 34 ................................T GGGACGATCAACAGGAATCCTCGACCGAACGCGA 32334 33 97.0 37 ................................T CCCTCTCAATGGGACATCCTAGCCCTTTCGGACTAGC 32264 33 97.0 34 ................................C ATTTCGTACCGAAGACCGCTATCACTTCGAAGTA 32197 33 97.0 32 ................................C GGCAGCAGTCGAAGGAATCCGAGCGCGAGATC 32132 33 97.0 33 ................................C GGTCGCGGATGTGTCACTGGTCACGTCGATCGA 32066 33 100.0 33 ................................. GTTCGCGTGTTGCGCCTTGCAACCCCCTGCGCG 32000 33 97.0 35 ................................C CAAAACATGTCGATGGCTTTTTCCAGATTGGAGAC 31932 33 100.0 34 ................................. ACCTGCTTGCGCAGGGTGCACAACGCGGCCTGAA 31865 33 97.0 37 ................................T ATGATCGTCCGAAAGGCGCTGATCGAATCCTTGAGGA 31795 33 87.9 0 ................A.............TCC | ========== ====== ====== ====== ================================= ====================================== ================== 18 33 97.7 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAAGA # Left flank : GGAAGCGGTGAGAATGTAATTTACGAACTTAACACTGAACTTGCCTGCATCATGCAACAATCCGGCCAGTCCCGCAATATGTTTGACTCCAATTTTATCCCCAATCCACTCTGCAATCTGCCTGACACTATGGGAATGTTCTTCAACCGTCTGAATTTTGCCGTCACTTTGTCGAATATGGGCAATGGACCGCAATGACAGCACCTCCGACTTAAAGGGAAAACGAAGATGAATGAATAGTTCTTTGGAAGATAGTTCCTGTGTCCTAATATTGGATATTCAGTATCGAAACTCCTTCTTTCGAGGATTGTTTACTGGAGAAAAATTTATTTACGCGAACCTCAAGCTCACATAAAATTGCCAGGAGGTTCGCGCTCTTAGATTGATACGGCAAGATCAAGAAAAATCAATGAAATTTGATGGTAGACAATGCATCATTTCTGCATGTTCGCGGAAAACACCTGGAAAATGCTATAATTAAAGGGCGCATACACGATGCA # Right flank : GGACTTCGACATCGTTTTCAAGGTCGGTACTGCCGGTCACAACCCAAGTTGGGCAGAGTCGCACCATCAACCACAATCAATGCTGTGATGAGAAACCGAACACGTCGCTTGATTACCGACACGCTACCGCCCCACGCCAAACAAAAAAAGCAGCGCCGGTCCAGCGCTGCTTCCGCAAACTTCTGATTATTCCCCGTTCAGGAAGATGTAGCGTGCCAGGATGAGAATTGCCAGTACCCACATGAGCCAGTGGATCTTGTACTTGCTGCCGTCCTCCGCGGTCTTGCCGGCCAGGTTGGCGACAAGCGCCAGGACGACGTAGGACACGATGCCGAAGGAAATGCCGTTGGCGATGTTGTACGTGAACGGCATGATGACGATCATCAGGAACGCCGGAATCGCGTACACCATGTCGGTGAAGTTGATGTTCTTCACCGATTGCATCATCAGCACGCCGACGATGACGAGCGCCGCGCTCGTGGCCGCACCCGGGACGAGCG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 41543-44504 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJRAY010000024.1 Thermobacillus xylanilyticus strain XE, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 41543 31 100.0 36 ............................... CTTTAATCATGTTGTGAGATGTTGGTGTCAGCTTGG 41610 31 100.0 35 ............................... CGTCAATACCGCGAAAAGAACCGTGAGGAACTCAG 41676 31 100.0 37 ............................... CCGTGATCTCTTGATATTGTGACGGTGTGATTTTTCG 41744 31 100.0 35 ............................... TCTTCTACTTCTTCCAGATCAACCGGCGCGCTGGG 41810 31 100.0 35 ............................... AGCTTCGCACAGGTCATCGTGAAGCGCGTAGTAGG 41876 31 100.0 35 ............................... GGCTCGAAGTTCATGAAGCCGATCAGGTACAGCTG 41942 31 100.0 36 ............................... GCTATTATGACTATGAATTTACTTGCGATTGTCCGG 42009 31 100.0 34 ............................... TCCCTCCCGCTCTCCTTCGGCGGTTCGGGCAGCG 42074 31 100.0 37 ............................... TTTACAGTTCGGCCAGCTCTTGCTCGAGCCGCTCGAG 42142 31 100.0 36 ............................... TCCGATGGATTTCCGGTGCGAACCGATGTGATCGAG 42209 31 100.0 35 ............................... CATTGCTTGATCCGGTATGCATCGTCGGCGGTTGG 42275 31 100.0 36 ............................... CCTCGCAACGGGATCCGAGATACCAGACGCCCGCGG 42342 31 100.0 35 ............................... CGTCCTCGACGTGATAATGGCCCGTGTGAATCTCG 42408 31 100.0 40 ............................... TCCGTCAGCTTCCCGCCGTATGTGCTGAGTACCGTCCACG 42479 31 100.0 35 ............................... TACTCGATCAGCGGAAACGATCCACGGTTCCCGAG 42545 31 100.0 36 ............................... CGTACGAACCGCAACCGCGGCAACAGCTATATCACG 42612 31 100.0 35 ............................... CATCGCGGCACACAACCGGTTCCGCAAGTCGGATG 42678 31 100.0 36 ............................... CCGTCCGTGAAGTCGACGTCGAAGATGTCGGCGCTG 42745 31 100.0 35 ............................... CAGATATTCGACCGGGCCGAAACCAACTCCCAAGG 42811 31 100.0 36 ............................... CTTCCAGCCGCTTAGAAAGTCTGTAGTACGTACTCG 42878 31 100.0 36 ............................... ACCGGCACAGACGAACGCTTGGAAAGATGGACCGGG 42945 31 100.0 34 ............................... TGCCTAATTGTACCGTTGAAAGGAGACTGCGAAG 43010 31 100.0 35 ............................... CCAATAGTCCAGCGCTCTCAGCGCTCCGCCTCCAG 43076 31 100.0 36 ............................... GCTTTAAGCAGTTGCACAAACGTCCAGCTAAATGAG 43143 31 100.0 36 ............................... TCTCGAAAATAGGCCGGGCAGCCTATCCATTCGACG 43210 31 100.0 35 ............................... GTTCGAGCAGCGCCTGCGCGTCCATGCCGTTGTAG 43276 31 100.0 36 ............................... TTCTTCTCGGCCGTCTTGAATCCAACAGAGAGTCAG 43343 31 100.0 38 ............................... GTCTTTTCTTCGTCGATCTCGTATATGCCGAAGCAAAG 43412 31 100.0 34 ............................... CGCTGGTTGAACTGATCCGGCGTCCGCAGCACAG 43477 31 100.0 35 ............................... TTCCATCGCCGCGGCCAGAAGATCGGGGTCAAAAG 43543 31 100.0 35 ............................... CACCTTGCATTGTGATGTTTTGCTCCACTCTAACG 43609 31 100.0 35 ............................... ACAATCGCCCTGCCAGTAGGTATTCAGGGTTTCAG 43675 31 100.0 35 ............................... TTCGGAGTTTTTGACCGGGTCGTCCACTATCGCAG 43741 31 100.0 37 ............................... ACCTCCCATGGTGTGTCTATGCCTTCGGATTGCCAGG 43809 31 100.0 35 ............................... TGAAAACGAAAAAAGAAGTGCCGACCGTCATTCGG 43875 31 100.0 36 ............................... CCGGAAATCGGTGTGAAAGCCGGTGACCTCGGCGGG 43942 31 100.0 35 ............................... AGGGCGACGAAGTGATTGATCTGGACGGGGATTGG 44008 31 100.0 35 ............................... TTCGGCCCGTCGAAGCTTCGCCGTGACCAGCGCGG 44074 31 100.0 35 ............................... CGATCAGACGGAACAATTTGCTGACTCCATCCGTG 44140 31 100.0 35 ............................... GTACCTTGCACCCACGCCTTCGCGGCGCCCTGAAG 44206 31 100.0 37 ............................... CGGCTCCGCGTCCAGATACGGCTTACCGTCATTGAGG 44274 31 100.0 36 ............................... TCACCAACGAGGGCACGGAGACGATAACCCATTTCG 44341 31 100.0 36 ............................... CGATCATCGCCTTGTCGCAGCTGAGCCGCGCAGTCG 44408 31 100.0 35 ............................... CAGACAATGACGGAACTGCTCGAACGAATCCGATG 44474 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 45 31 100.0 36 TCGCACCCCGTGCGGGTGCGTGGATTGAAAG # Left flank : CCGCCTTTTCTGTAGAAGTAGGGTGGTGGAGTTCGATTGCTTGTACTTGTAACTTACGATGTGGAGACATCGACAACTGATGGTAAACGGCGTCTTCGTGAAGTAGCGAAAATCTGTGTAAACTACGGGCAACGTGTGCAAAACTCGGTGTTTGAGTGTTTGGTTGACCCGGTGCAATTCAAACAGTTGAAGGCCAGATTGGTGAAGGTAATCGATGAGGAGCGTGACAGCTTAAGGTTTTACTTGCTCGGGAGCAAATGGAAAAGAAGGGTGGAGCATATCGGCGCAAAACCAGGTTATGATCCGGAAGGCTTGTTATTGTTTGAATGAGTGCGAACCCCAAGCAAACATAAAATGCCTGGGAGGTTCGCGTATCAATTGAATTCAAGGTTTTCGTGAAATAGATCAGATTGAGTTATAATTTTTACGGGTTATTGAAGCAGGGTTCGCGAAAATAGCTCGCTAAAGCCTTGCGATTCATGGCTTCGCAGTTAATACTG # Right flank : GTGGCCAATCGCGACGGTGAGAAGCTGGTGTTTAGAGCCTATCCGAAAACCATTATAAGCAAGTAGGAAAACGGTGGAACATGTCGAATTCCTTCAAGAGAAGCACTTGGAGGAGATCGTCATGGCAAATGCACCGAAGCAACTCTTTTCGATTCCCGATGAACTGTGGGAGAAAATCCAACCTTTGCTACCGGAGGAACCGCCAAAACCGAAGGGCGGTCGTCCGCGCATGGATGATCGTCAGGCGATGACGGCGATTTTTTACGTGCTCCGCACGGGCATCCAGTGGAAAGCGTTGCCCCGTCAAATGGGGGCCGCCAGTACGGTGCATGACCGCTTTCAATATTGGCAGGAACAAGGCGTATTCAAACGGATGTGGGAGGCCGGGTTGCAAGCGTACGACGAGGCCAAAGGAATCGAATGGACCTGGCAAGCGGTGGACGGAGCCATGACCAAGGCTCCGCTTGGGGGAAAAAAAGACGGGTCCTAACCCGACGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 55794-56032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJRAY010000024.1 Thermobacillus xylanilyticus strain XE, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 55794 30 100.0 38 .............................. TGGGAATTTTGGATTTCGTCAACGGATCATTCTACTAC 55862 30 100.0 41 .............................. CCGAAGCTGCGGAATGTCCGTCCCTTTTGCGATGCAATCGG 55933 30 100.0 40 .............................. CGGATTCGCCCACAACAACTGTGCCGGGCGCTGTGTCAAA 56003 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 4 30 100.0 40 GTTTTGATAGTACCTATGAGGAATTGAAAC # Left flank : TCCGGGAAGTGTTCCCGGGCTGCCCGGAAGTGCGAGGCGGCTACGCGTACGTGAACGACAAGCCGGGGCTCGGCATCGACATCGACGAGAAGAAGGCCGCGAAATATCCGTGCCGGAACGAGCTGCCCGCCTGGACGCTGGCCCGCAGGCCCGACGGCACGGCGGCGCGGCCATAAATCGGACGGAGATTGTTCAGGAAGTTTCTCGCAAGGCGCATTGTGCGGGCGCAGGTCCTATGCATCACCCGCGGGTTTATCGCACAGTGGTCGGGAGCGTTTTTAGGGTTTTGGGCATGACGGGAAGTGTGAGCCGCTTGGGTAGTCCAAGATTGATTTTGTCGTCGACCCCTGGTAGCGCAAAAAAACCGGGGGATCGACGACATCTACAAAGCGTGAGATATGCTGATTCTTCCAGCAGTGTGTGGTATATTAGAAGAAATTGTGGAATTCAGAGAATGGCATAAATCTGGCTTAGTGATTGATTTTACAAGGTTTTTTGGG # Right flank : CTCTCAGCCGCCATGGTCACGGCGTATCACAGTCGAAATCCTTCAACTCTTAGCAATATCAGCATTACCGCTTCTCCCAATCCGCTGCTGGGGTGGAGAAGCTTTTTTCTCAATCTTCGAACCAACCGCCCTCCCGCGTTGTCTATAATTTGAGGTGAGACCATTGGCCGATGAACATTGGCGGCATCTGGCGGGCCTGGACCCGCATGCCCTGGATCAGCTCATGGCGGAATACGGACAGACGGTGTGGAACTACGCCTTTCTGCTCGTAAAGCACCGCGCCATGGCCGACGATATCACCCAGGACGTGTTCCTCAAGGCTTATCGCCGGTGCGGGGGTATCGAGGCGAGGCATCATCTTGTCCCGGAAAGGCGGCGGACGAGTTTGTATGGAGAGGAGTTGGCTGGCAGCGCGGCGCCCGGGTGACATATACGCCGTCAGAGAATTTAAAGGACACCCAATCGAAAGTGCTCGCCAGTGGGTGGGGCTTCGGCGCGGC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //