Array 1 583399-583897 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAG01000001.1 Enterococcus faecalis strain NVIT04 NODE_1_length_1478411_cov_43.9052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 583399 37 100.0 29 ..................................... TTCATTGTTTTCTATATCCCAAGCACCTA 583465 37 97.3 29 ....................................G GGATTTACAATAACTTCGCTACCATCTTC 583531 37 100.0 29 ..................................... TATGTGATTGAGGGAATTTTGATTGATGC 583597 37 100.0 29 ..................................... TATGTGATTGAGGGAATTTTGATTGATGC 583663 37 97.3 29 ....................................A TAAGGCTAAAGAATCTATCAAGAAAGTAA 583729 37 100.0 29 ..................................... TCCAAAATTTAGAACAAGAAAAAAAGACC 583795 37 97.3 29 ....................................C TTATTTAAAAGACGGCAATATTAAAAACA 583861 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 8 37 98.6 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATATCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGACAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGTTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 201269-202909 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAG01000002.1 Enterococcus faecalis strain NVIT04 NODE_2_length_592072_cov_47.7319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 201269 37 100.0 31 ..................................... CTGCTCATTCGTTTTCTCCTCCTAACACGCT 201337 37 100.0 29 ..................................... CGTGCCTTCAAATCCAAAAAAGGTTTGTT 201403 37 97.3 29 ....................................T GGCTTGTAATGCCTGAGTTACAGTCTTCT 201469 37 100.0 29 ..................................... AACACTTCTTCTGCTAAAACAACATTTTC 201535 37 100.0 29 ..................................... TCGTTAATTGATGATGTAGCCAACGCCAT 201601 37 100.0 29 ..................................... CCACTTGAACGGAATACTGGAACGTTTTC 201667 37 100.0 29 ..................................... GGGATTGTTGGGATTAGTGAAACATCTGT 201733 37 97.3 29 ....................................T GGACTTAACTTCTATAATGACCGGTTAAT 201799 37 100.0 29 ..................................... GTGACAGATGGTAAATCGTTGTTACTTGT 201865 37 100.0 29 ..................................... TTTCCTTTCGTAGTGATCACAAAATTTTC 201931 37 100.0 29 ..................................... CCAGAAATAAAAGTTGACGTAAGTATTGA 201997 37 97.3 29 ....................................T AAGGGCAAAACTGAAAACGATACAACGAT 202063 37 97.3 29 ....................................G CTAAAGGATTTTTGATGATGTTTTCTCGT 202129 37 97.3 29 ....................................G GTGTCTATGTTTCGGAAGCCCCTTTCTTG 202195 37 97.3 29 ....................................T GATGAAAACCGATGGTATTTACTTTCACA 202261 37 97.3 29 ....................................T TAGTTATTGAACCTCAACGCACACCATTG 202327 37 100.0 29 ..................................... TTAAGTTCGACTGGAAGGCTCTTATAGGT 202393 37 97.3 29 ....................................T AATCATGAGTGGGGATCGCTGCTTTATGA 202459 37 97.3 29 ....................................T GATGAAAACCGATGGTATTTACTTTCACA 202525 37 97.3 29 ....................................T TATGCAGAAAAATTAGAGCAGCTGAAAAA 202591 37 97.3 29 ....................................C TCGTTAGAATGCCCTTCACAGCTGTTAAA 202657 37 94.6 29 ..................................T.T CTAATGAGCATTCATTACATATGTAGAAC 202723 35 81.1 114 ......................--.TT.CG......G ATATGATTGATGTAAAAATATCATTGATATGTATAAATATGGTTATTATATAAAAAATATAAGTAACGAATTAAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [202757] 202873 37 70.3 0 A...........C...A....TT.CTT...G..T.G. | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 24 37 96.5 33 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : AGAGTACGATTAGTTAAATATTTAGTTTTACAGCTATGTTGTTATTATATGTGTTGAACGAAGTTATTGATTTTAAAAGTAGTTGTTCCTCCTTTTTTTATATGCTACAATTTTTCTATATTAATCATTAGTTAAATATTTAAGGAGGTGATTATAATAAGAAGGAAAGGATTTAACAAAATAAAAAAAGAAATGGAATATGTTAAAGTAGTTACGAATTTACTAATGGTATCAAAATTTTTTACGCTACAGTCCGATGAAGATTTACATACATTAACTCTGTTTGGAACATTACTTATTTAATATTTATAGACGCTTTGTAATGAATGCGCTTTCTACGAAACTGGATAATAAAAATTGGCATTTTTCAAATGCTACTTTATGTAGTTTACTTTTTTATAGTGGCTATGTATGTTCGCATTTATTTCTTTTGAATAAAAATCACTTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //