Array 1 9602-7926 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROQ01000134.1 Cronobacter dublinensis strain cro910B3 contig134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9601 29 100.0 32 ............................. TGTCCACGCATCCGCGCCCGCAAAAATAATCG 9540 29 100.0 32 ............................. TGCTTTAACTTCGCCGTTTTCCATTTCAATCA 9479 29 100.0 32 ............................. GGCGGGGGAGTTTAGTAACAATCCCATGCAAA 9418 29 100.0 32 ............................. TGTATCGCGTCATAAATACCCGAAATAGCAGC 9357 29 100.0 32 ............................. TCTTTCGCGTTACGCTTCGTGATGAGGATGAA 9296 29 100.0 32 ............................. GTCCTGCTCAGTGATATAGAAATTCCTCCGGA 9235 29 100.0 32 ............................. CGTATCCTCCTTTTGTTGCGTACGCAAGGAGA 9174 29 100.0 32 ............................. CTACTTCAATCGTGTCTGACCCTTTGGCGGCT 9113 29 100.0 32 ............................. CTGGGAGGCTTTGTAGGCACGTTAATCGGTGT 9052 29 100.0 32 ............................. GGATGCCCCTGATTACTGGACAGGTGAGCAAG 8991 29 100.0 32 ............................. AACAATGTTGACTTCGAGAGGTTCCATCCATT 8930 29 100.0 32 ............................. GCGCTGCCAGCACCGTTCCGGGGCCAGCAGGG 8869 29 93.1 32 .G.G......................... GGCTTGGAAAACCAAAAGGCGCGGGCGCGAAA 8808 29 100.0 32 ............................. TAATGCGCGACAGCCAGACAAACTTTCTTCAA 8747 29 100.0 32 ............................. CCGGCACCGTCGCCCGCGTAGCGCGTCATGTC 8686 29 100.0 32 ............................. CCGTGCGCTGCTCGCCCTCAAATGCAATAGCC 8625 29 96.6 32 ............................C ATTAACCGCCTGTTAGTACCTGCGCCGCGTGA 8564 29 100.0 32 ............................. AGTAACTTATGGTCAACGGCCACCAGCGGCTT 8503 29 100.0 32 ............................. GGTTTGTGTTCACCGCTTAAGTTAATGATATT 8442 29 96.6 32 .................A........... CGTTATAGAGAGCGTGCAGCTCGATCCTCCCC 8381 29 96.6 32 .....................G....... TTAAGTTGTTGATTAAAAAGGCGCTAACCGGC 8320 29 100.0 32 ............................. TGCAAACAGGCGCTTAAATTCTGCCGCGTACA 8259 29 100.0 32 ............................. CGATCCGCCCATTCATTACTGACCTGAAAGAA 8198 29 100.0 32 ............................. ACCCAATTATTCGCGCTCGTTTTTCTGCTCTG 8137 29 100.0 32 ............................. GGCTTTTGGGTGGGGGTGGTGGCAGCGCGAGC 8076 29 100.0 32 ............................. TCGGCAAAAGTACAATTTGTGAAACGTTACTA 8015 29 100.0 32 ............................. ATATACGCCGATGCAGTGCCGGAAACCGACCC 7954 29 93.1 0 ...........C..C.............. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACTATCACCAGCGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGTCCGAAGACGAGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGTTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGACAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGTAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCATTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGTGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1945-86 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROQ01000018.1 Cronobacter dublinensis strain cro910B3 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1944 29 100.0 32 ............................. GCATTCTTCCATTGCAATAGTGCACTATCCGC 1883 29 100.0 32 ............................. CGCCGCCTGGTCGCCGACCGGCCAGAGGTGGC 1822 29 100.0 32 ............................. GCGGGCGCACTCGTCCAGGTCAGTGGGGATAT 1761 29 100.0 32 ............................. CCATCGCCGCCGCTGGTGTAGAATCGCGCCTC 1700 29 100.0 32 ............................. TCGCCGGTCGGGTCGTACGTGTCTTTGTCTTT 1639 29 100.0 32 ............................. CAATTGCTTAACGCCGAGGTGGAGCAGCAGGC 1578 29 100.0 32 ............................. TTGACCAGCCGCACCATGCCCGCGCGGTGGTC 1517 29 96.6 32 ........................G.... TTTCGTTTGCGTCGCCCGCGTGCGTCGGGACG 1456 29 100.0 32 ............................. AAAGAGGCGTACAAGGAGGCGAAAAGCCTCGG 1395 29 100.0 32 ............................. GCACGCTGACACATACCTAAAAAACGCCAAAT 1334 29 100.0 32 ............................. CTTTACGGCTCCGACCAGCTCGCGGGCGACTA 1273 29 100.0 32 ............................. ACCTGGTCAAACAAATGACTGACGCGCAATTG 1212 29 100.0 32 ............................. TGCTCCCAAAGCGATTGCAGGCATTCGTGATA 1151 29 96.6 32 ..........T.................. CGGCGGCGCTGGCCGCTACACCGGGCGAGTGG 1090 29 96.6 32 ............................A CGCATCGCTGAACTGGAGGCGAGGACGGTTAA 1029 29 100.0 32 ............................. CAACGCCCCGCCAGTGTAGGAGCACGGCAGGG 968 29 100.0 32 ............................. GATTTCCTGATAATCACACTCAAATAGCCTGG 907 29 100.0 32 ............................. TGGTTGTCGTCCGGCATTATTGGCCTGTTGGC 846 29 100.0 32 ............................. TGTATTTACCCGCGCCACGAAAACCCTGAATT 785 29 100.0 32 ............................. GATGAGGCTGTCCGGACAGGAGGTCGGGCATT 724 29 100.0 32 ............................. GTCGGTAATCGGCAGCGACATAAAAAATATGT 663 29 100.0 32 ............................. AGTACACGCGAATCGTTCCAAAATGACACCGA 602 29 100.0 32 ............................. GTGGTGCCGCGTGAAAATACACTTCTACAGCC 541 29 93.1 32 ...........AG................ GTTATCCAAAACCTTAACCACCCCCGACGCGT 480 29 96.6 32 ............G................ CCGTTTTTTCAGCTGGCCATAATATTATCGCC 419 29 96.6 32 ............G................ GATGCCGGGATTACAATGGATGACGGCATGGA 358 29 96.6 32 ............G................ TACAGTATTTACCGCATCGTTAGTGACGCGCC 297 29 96.6 32 ............G................ ATTTCGCTGAAACAGTAACGGCGCTCTGACAG 236 29 96.6 32 ............A................ CGCGAACAGATACCAAACGAGATGGGTTTGGG 175 29 96.6 31 .C........................... CTCGGCATTACAGTCAAAAATCTGGAGAGCC 115 29 75.9 0 ..A.....TC.A.C......A.......T | G [92] ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTTGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCTGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGTTCTTTAAGAATGTGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGGTGTGAAAAATTCCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : TTTGGAATAATTCAAACGAAGGTTTAGGTTCTTCGGGAAATAGAGTTGTGATTATTTTTTATAAATATGATAACGCTTCTTAAAAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //