Array 1 3399987-3401116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LORX02000003.1 Pseudomonas aeruginosa strain FDAARGOS_121 unitig_0_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3399987 29 100.0 32 ............................. AGCCGTCGCCATGTCGAGGCCACTCCCTGTTC 3400048 29 100.0 33 ............................. CGCGACAACTCGTAAACCAGCATGGCGCAGGAC 3400110 29 100.0 32 ............................. GGATTGGCGCTGAGTGTCAGAAGCTCGCCACA 3400171 29 100.0 33 ............................. TCGTTGATGAGTTCATTGCGCTGACTTCGCGGC 3400233 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 3400294 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 3400356 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 3400417 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 3400478 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 3400539 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 3400600 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 3400661 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 3400722 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 3400783 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 3400844 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 3400905 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 3400966 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 3401027 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 3401088 28 79.3 0 A..........A..C..-.....A....T | C [3401092] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3410289-3412699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LORX02000003.1 Pseudomonas aeruginosa strain FDAARGOS_121 unitig_0_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3410289 29 100.0 32 ............................. CGGCCGGCCTGGATCATCTGTGGCGGGCAGGG 3410350 29 100.0 32 ............................. TCGCCTACCTTGTCGTTCACATCCTTGAAGAT 3410411 29 100.0 32 ............................. GATCGCGGTAACAGCAGGGTTGCTCGAGCAGA 3410472 29 100.0 32 ............................. TCCTCTGGGGTGATCACCATGCCAGTGAGACA 3410533 29 100.0 33 ............................. TTTGCTTTAGCCTCGGCGGCGTATCTCTCCCAC 3410595 29 100.0 32 ............................. TTCTTCCTCTGCCTTGTCGATCTTGTCGAGTT 3410656 29 100.0 32 ............................. TAGAGATCAAGCGAACGCAAGCCCATACTGCG 3410717 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 3410778 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 3410840 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 3410901 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 3410962 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 3411023 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 3411084 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 3411145 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 3411206 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 3411267 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 3411328 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 3411389 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 3411450 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 3411511 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 3411572 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 3411633 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 3411694 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 3411755 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 3411816 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 3411877 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 3411939 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 3412000 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 3412061 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 3412122 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 3412183 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 3412244 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 3412305 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 3412366 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 3412427 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 3412488 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 3412549 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 3412610 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 3412671 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.3 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAACTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //