Array 1 41-295 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOLO01000088.1 Legionella pneumophila strain NY12 contig_88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 41 36 100.0 35 .................................... TCCTATACCTTGTCACAATTTCCTCATATGGCTCC 112 36 100.0 37 .................................... CATAATTGGGAATTGGTGTGAAATGCTCACCGTCCGC 185 36 100.0 39 .................................... TTAATTGCGCCAGAAACAGCACCATTTATGGTTACAGCC 260 36 86.1 0 ......................TT...T.A.....T | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 96.5 37 CAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TGAAACTTACTTCATGACCCGGACATTTTACTAAAAAATTC # Right flank : ACTCCATACTTTATTCTCTGTATACTATTATAGTAAAAATCCATGGGGTATTATTTTATATAATTAAACAGAATTTAATTTTGTTGTATTTTAATTTCTTCGACAAACATCAGAAAATATAATCGGTCATTTTTACCAATTATTTGTAAATGTTAGATGCAGTTTTAGGGGCACAATAGGTCATATTTGGTTATATTTGCTTTTTTTCATCTTATTTATTTTATAATTAACTTGATAATTATAAAGTGCTATTTTACTCTGTTGCTTTTTCTGACAATAC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1610-66 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOLO01000137.1 Legionella pneumophila strain NY12 contig_137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1609 37 100.0 35 ..................................... CCTGAAAACCCGCCACAACCCGCGCCAGACTTGAA 1537 37 100.0 34 ..................................... ACCAAGTCGAAACAACATACCGAGACCGTGTTGA 1466 37 100.0 35 ..................................... TACATTGTTACGTTCATTTCACTCAGTTTTTCATA 1394 37 100.0 34 ..................................... AGCAATAACCCAAAGTTTCGCGCGCGTGCGCGGG 1323 37 100.0 37 ..................................... TTATAACATCGGGATGGCGGTTTATTGGTTAAGTAAC 1249 37 100.0 34 ..................................... TTCTTTTTTCAGATTTCATTTCCTTTTCCTTGTG 1178 37 100.0 36 ..................................... TTTTTATCGTAAGCTTGATTAACTAGACATCTACTA 1105 37 100.0 33 ..................................... GTTTTAATTTAATCATTACTGCTTCCTTATTAA 1035 37 100.0 37 ..................................... TAAGATATTGGTCGATTGTTTGCAAGACGTCATCAAA 961 37 100.0 34 ..................................... CTAAATCAGCAGTCATCAAAACCCATATGATTGT 890 37 100.0 31 ..................................... TTCTCAGAATGGGAACGTTACACATCATATT 822 37 100.0 34 ..................................... TTAAGTATACGTTTCTTTGGGCTATTAGTTCTAA 751 37 100.0 36 ..................................... TTCTCATATTTTAAAACAATAGAGTAATTCATTTTA 678 37 100.0 35 ..................................... AATCTTAATTTATGCGCCTTACCTTCTGCTTCATC 606 37 100.0 36 ..................................... TATACTTAGACAATATCATCATTTCCTATGTTTCGA 533 37 100.0 36 ..................................... GCTATTCCAGATAGGTAGTTGTTTAGAGCATTTTGT 460 37 100.0 35 ..................................... TTCGATACTCCTTAGCGGTACTTGCTAAAGTAGTT 388 37 100.0 35 ..................................... AAATAATTCTTGTGACTCACGTGCCGCCATTTGAA 316 37 100.0 36 ..................................... TAGGAATTGATTGGGGTAACGCCATCGCCATAGAAG 243 37 100.0 33 ..................................... TTACTTCATGACCCGGACATTTTACTAAAAAAT 173 37 97.3 34 T.................................... TCCTATACCTTGTCACAATTTCCTCATATGGCTC 102 37 97.3 0 ..........................C.......... | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 99.8 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : CAACCACTGAAACTGACAAACGTTTGTTTTTTAGACACAACACTAAAA # Right flank : CCATAATTGGGAATTGGTGTGAAATGCTCACCGTCCGCCAATAATCCCTCATCTAAAAATCCAACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 53814-55064 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOLO01000019.1 Legionella pneumophila strain NY12 contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 53814 37 100.0 34 ..................................... TAGATATAAAAAGATTAAATCTTCTAGCGCACAT 53885 37 100.0 34 ..................................... TCACTACTCCTGAAGGTTATAATTTTTGCTATAA 53956 37 100.0 36 ..................................... TTCGAATACAATCCTAGTGTCTCTGTGTGAATTAAG 54029 37 100.0 34 ..................................... CAGGCACTGGTTCACTAGACACTGTAACATCTAT 54100 37 100.0 35 ..................................... CAATAACAAGCGAGCCTTTTGTACTAGAAGGTTTA 54172 37 100.0 34 ..................................... CTACCAGTTAATCGTAACTCAATCTCTTTTTCAA 54243 37 100.0 34 ..................................... ATAGAATACATAAGTGCAAATTATTAAATGTTAC 54314 37 100.0 34 ..................................... TGAATGTAGAAACCAGATGCCACGAATTATTAGA 54385 37 100.0 35 ..................................... TTTGTATAAACGTTCTGATATGACTTAGGTAATCT 54457 37 100.0 34 ..................................... CTAACCTGATTGCTCAACAAATAATGCTATTGGC 54528 37 100.0 34 ..................................... TCACTTTAGGCCAACGCCGATCCTCCGCTTCGAA 54599 37 100.0 34 ..................................... TGACGCAAAGGATTTATTAAAAACGCCTTGTAAT 54670 37 100.0 31 ..................................... ATTTTACCTTTTAACACATATTGATAGGCGT 54738 37 100.0 36 ..................................... TCCATAACTGAAACGTCCTTATGCCTCAACATAATG 54811 37 100.0 34 ..................................... GAATTTGTCGGCCGCATAGACCGCTTTTATCAAA 54882 37 100.0 36 ..................................... CTATTGCAAGCTAGTTTGATCGTGTTATTATAAGAA 54955 37 100.0 36 ..................................... TGACAAACGTTTGTTTTTTAGACACAACACTAAAAG 55028 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 100.0 34 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGATTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCC # Right flank : CCTGAAAACCCGCCACAACCCGCGCCAGACTTGAACCAATAATCCCTCATCTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //