Array 1 9284-9579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNT010000024.1 Clostridium cochlearium strain N22 No.22_ctg024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 9284 29 93.1 38 ........G.......A............ CCAGTTATAAATACACTGGTACCTACTTCTTTCCTAAG 9351 29 96.6 37 ........G.................... GTAACTAATAGGAATGGGTTAGACATAGCAACTAAAA 9417 29 100.0 37 ............................. AAATATCCTCTATGTCTTTTTCAACTTCTATATATAG 9483 29 100.0 39 ............................. GAAGCTACAGAATAAGCCAAGATACAAAAGATAAAACAG 9551 29 89.7 0 ...................A....C...T | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 95.9 38 TTTTTAGAATAACTATGAGGGATTGAAAC # Left flank : AACCTTTTCACTTAAATATTTAGCAGCATTTATTGAACTTAAATTTAATGATAAATTTAGTATTTCATTTTCTAATCTTTTTGTTTTTTTAGCTTTAGGCATTAAAAAATCAAAGTTTTCTGCAAAGGTTTTATGACTACAAGCATCATTTACACAAAACATTTTTCTGTTAGTTAATTTTAGTATTACCTTATTGCCTTGAATAGGTAAATCTTGAAATTGTTTAACATATCTTGAATGAACCTTAGTTGAAGGTGTTCCACAAAATGGACAAATAACTTGCTTTCTATTAGAAATAACATTTGTATAAAAAGTATTATCTATGATTTGATGATTAACATATTCAAGATTTTTATCTAATAATTTTATAAATTCATCCATAAAAAACTCCTTAATATTATTAAATTATTTCAAATTTTATCATAAATTTAACCTTGGTTCAACAGACATTGGAAAGAACCATTTTAATCTTGACATTTATGGCATTTTCTGTATCTCCG # Right flank : TTAATAGCGGTTTAACGACCGCTTTATTTTTATGCTTGGTTTTTAGAGTAATATAAATAGACTTTATGTTTAAAATTTTAATAGAAAGTTCTATTTTAATAAGTAAAAAATCACTATTATTAGAAGGATTTACAAAAATAGTGTGGAAATATAAATATGGTAGTATATGTTATACTCATATACAAATTATGACATAAGCGAGGAGATTTCATGAGAGCAAATTTAGAAATAAGTTTTTCAGATAAATTGGAAGTACCAATACAATATAATTATTTAGTTCAGGCTATGATTTTAAATTGGCTTGGAGACGAAAAATACCAAAAATTTATCCATGATAAAGGTTATGAATACAATAATAGATCCTATAAAATGTACACATTCTCAAAATTATATGGGAAATTTTCTGTAAATTCAAAAAATGGAATCATAACATTTTTTGATAAGGTAAATCTTATAGTATCATCTCTAGATACAAGATTTATACAATATTTAGCTTCTAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAGAATAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 18722-20016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNT010000024.1 Clostridium cochlearium strain N22 No.22_ctg024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18722 29 100.0 37 ............................. TATTATGCAAGGATTGTTAAATGGTATAACCAATATG 18788 29 100.0 40 ............................. TAACATAGAAATTGGGTTAGATAGAAAGGAAATATTAGAG 18857 29 100.0 36 ............................. TTTATCAATGTAGCAACCCTAAGACTAAAAATTACG 18922 29 100.0 37 ............................. TAAAATTTGTAACTATAGATTTTATAGCACTATCTTG 18988 29 100.0 38 ............................. TAATGCCAAATACCTGGTCATAATCATCACTGTAAAAG 19055 29 100.0 38 ............................. TTGTTCCACTTGAAGATAAATTTAAAACTGTTGAAGAG 19122 29 100.0 36 ............................. AAAGTAGTTTGAATATTTCTAGTCCAACACCTCTGG 19187 29 100.0 39 ............................. CAGTGCTTGGTGTAGTGAAAATGGATTGAAAGCTTTAAG 19255 29 100.0 36 ............................. ACACTAAGGAGGAATAAGAATGAATAATTTAATACG 19320 29 100.0 36 ............................. AAAAGAACAGTTGACGGATTAATCGCTACTGCTAAG 19385 29 96.6 37 ................A............ AAAGACGTAATATCTGCCAAATGCGACGCTGTTTCCT 19451 29 96.6 38 ................A............ GCAAAAGATACTCTTTTCGGGAATTTCATTATTCTATT 19518 29 96.6 39 ................A............ ATAAAAATAGTGGATTAGTTAGAAGTGTATGGGTTCCTT 19586 29 96.6 37 ................A............ ACAGTTTTCGTATCAAACCTAATTCATAAAAATTAGT 19652 29 96.6 36 ................A............ TGCTATCGCAAATAAAATACGTTGTTCTGTAGGTGA 19717 29 96.6 40 ................A............ TAACAAAACTCCCAGTTCTGCCGAACACTCTGTCATTCCG 19786 29 100.0 39 ............................. TGCCATACGTCTAATGACATCATTAAAGCACCTTTTCTG 19854 29 100.0 39 ............................. TTTATTTGAGTAATCATTTCCTTTGTTTCCATACTTATG 19922 29 100.0 37 ............................. TAGTTAGTTTCTACTTCTTGGAGCGTAGCGGTCGCCG 19988 29 96.6 0 ........................A.... | ========== ====== ====== ====== ============================= ======================================== ================== 20 29 98.8 38 TTTTTAGAATAACTATGAGGGATTGAAAC # Left flank : ACGCATATGTTTGCTATATTAGTTTACGATTTTGGTGAAAAAAGAGTGGGCAGAGCTTTAAAAACTTGTAGAAAATATTTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATAAGTGATGCTAATTTAAAAAAGTTAGAAATGGAATTAGATAGAATTATGCATAGTAATGAAGATTCGGTAATTATATATAAGTTTAGAAGTACTAGATATACTACAAGAGAGGTTATAGGTCTTTCAAAAAATGAACAAGATATATTTTTATAGAAAATTTCGGAAACCATCGTTACTTGTTTTAATAATGATTATTGGATAAGAATTATTTACAAAGTCGTCGACCCCCAATCCTGTAAAAAACCCGGGAGGTCGACGACAATTTTTAATTGGCTCATAAGTATTGATATTATTGAGTTGAAGCAATATTTACATATTTTTGTTTACACTTTGTTAACAATAGATAGTTTTAACAAAGTGTGTTATAATGCAGATATAATGGG # Right flank : CCATAATAAAAAAACACCTTACTCCATACTATAGATTAAAAAATTACATATGGAGTAAGGTGTTTTTAATAGATAAATAAATGAACCGTCCCCTAAAAATTTACCCCCCAGGTACTCAAGTTATTACTATTTCCTATCCAAATAGGACAGTTCATGGGAATGAAATCAAATAATTCCTCAACATTATTATTAAACATACGTATACAACCTAGGGATGAATCGGTTCCAATGGACCAAGGACTATTATTTCCATGAATTCCATACATAGAACCACCATCTATTGACAGTCCAAGCCATCTTTTCCCTAGAGGATTTTCAGGCGTTCCACCAGGTACAACTTGTCCTGTTCTTGGGCTAATCCAAGTAGGATTTATAAGTTTAGATACAATTGTAAATTTACCTTCAGGAGTATAAGAAGGTGAAGCACCTGCAGCTATGGGATATTTCTTGTGTACTTTACCATATAAATATACTGTTAAAATTCTAGTATCTTTATTTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAGAATAACTATGAGGGATTGAAAC # Alternate repeat : TTTTTAGAATAACTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1478-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNT010000005.1 Clostridium cochlearium strain N22 No.22_ctg005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1477 30 100.0 37 .............................. TTGTATTCCCACCCGCTGAAATCTATTTCCTCTATTT 1410 30 100.0 35 .............................. ATTAAAAAAAGAAGGTAGTTTATTTACCCTCTTTC 1345 30 100.0 37 .............................. ACCAAGGCGGAGCTCCAGGATTAAATCTAATAATTAG 1278 30 100.0 34 .............................. AAAATTTATTAACAAAATAATTGATGAACATAAT 1214 30 100.0 36 .............................. TTCTTTCTCATTTTCAATTCCTCCCTTTATACATAT 1148 30 100.0 34 .............................. TCTATACAGAATAGACCATTTAAAGCGTATTTTC 1084 30 100.0 35 .............................. TGTTCTATAAGCTGCTCTGCTAAAAGTACGAATTC 1019 30 100.0 35 .............................. AGATATAAGTTATAAAGATAGAATAAATATACAGG 954 30 100.0 34 .............................. GAACTATAGTTGCAATATATGTAAAGACACAACA 890 30 100.0 37 .............................. TTTTAGGAACTTCTTCAACTTTTGCTTGACATATTCC 823 30 100.0 35 .............................. TTGAATACTTTTGAATCAATATTGAGATTAAGTGC 758 30 100.0 36 .............................. TGAAGGAGTTATTAATTTTGACACAGATAATATTAT 692 30 100.0 36 .............................. GTATGGTGAAAGGGATGGCACGGGAGATGTTTATTT 626 30 100.0 34 .............................. ACATTTAAATCGTTAGGTTTTTCGTTAGGTTTTT 562 30 100.0 34 .............................. TCTGCTATAACTGATGTTGAAGTTAATTCCCCCA 498 30 100.0 37 .............................. AAAATCAGACGTGTTGATTATAGATGATCTATTTAAG 431 30 100.0 34 .............................. CCTAAAATTGGTATTTCTCCAAAATTTAATACAT 367 30 100.0 34 .............................. TTACCAAAGTATTAACAGTTACTTGTTTATTTTC 303 30 100.0 35 .............................. AATTCAAGAGATAATGAAGAAGGAACAACTAAAAT 238 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.8 35 GTTGAACAATAACATAGGATGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCCTTTGATAATTTAAAAGAGCCAATGGAAGTAGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACTCCTCTGGAAAATGATAAAGTAAAGGTGAATTTTAATGAAAAGCAAAGAGCTATAACTAAAGGTCAATCTGTGGTTTTTTATAAAGATGATTTATTAATAGGCGGAGGAATAATTGAATAGAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGATTGATTAAGGGTTGAAGGGAGCATTTAAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATAGGTTTGTGATATTCTTAATTTTAACAAACCTTGATTTTACAGTG # Right flank : CAGCATAATATCTTTGAATTGTAAAGTAAAAAAATATCGTATATTCTATTTGGAATAATACGGTATTTTAATACTATTTTTAAATTGATTCTCTTAAGCCCCTAAGCATACTTGGACAATTGCTTATAAATTATATATAATATAAAAAGTGATTGGAGGTAACTTATGAGAGGCAGAAGTTATGCAAAAGAATTAAAAGAATCAATAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 6377-4263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNT010000005.1 Clostridium cochlearium strain N22 No.22_ctg005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6376 30 100.0 34 .............................. CCGATTTCTAAGTTTCTACTATCTCTCTTAGTGT 6312 30 100.0 36 .............................. CACTCTAACCTATAATTATATGTAGACAAGCCTTCC 6246 30 100.0 36 .............................. TCTACGTATAAGTTATTTAAAGCCATCTGTGAGCTC 6180 30 100.0 36 .............................. TGTTAGTGTTTAATAGTTTTAATCCTGCCTTAGCAC 6114 30 100.0 34 .............................. ACATCTTGTTCAATATTTCCAGACTCTCTCAAAT 6050 30 100.0 35 .............................. GTTGGTCGATGTGATATTGACCTTTGTTTGTTTGA 5985 30 100.0 34 .............................. AACTTAAAAAGACGGCAATTCAAATAATAAATAA 5921 30 100.0 36 .............................. TATGTAGCTAATGTCTCTTTTATTAATTCTATTTTT 5855 30 100.0 34 .............................. GTATTTCCCCTACATGTATTTGTTCCCCAAATAT 5791 30 100.0 35 .............................. TTTACTGTTAGCCAGTCAATCGACTGGTATTCTTT 5726 30 100.0 36 .............................. GAAGTTGCTTGAAGAACTTCGACTTCCTCGCATAGA 5660 30 100.0 36 .............................. ATGTTATATCCCAATTCAGAAGCTGCTTGTTTAATT 5594 30 100.0 34 .............................. AATTTAAGTTCTATTTTTTTTATTTCTTTCTTAA 5530 30 100.0 35 .............................. GCTTAAAAGATTCTTCGTTACCTCCAAGTCTGTCC 5465 30 100.0 34 .............................. CCGCTAAAATTATTATATAGTTTAGTTTCAAAAA 5401 30 100.0 36 .............................. ATATTCTTAAATCTTTTAAAGTTATTTTTTTATATG 5335 30 100.0 34 .............................. GCTTGACATTCGCAAAGCAACGACACAAATAAAA 5271 30 100.0 35 .............................. TTTTACTAATATTTTTTAACACAAACTTATCTTCT 5206 30 100.0 35 .............................. GATATGAAATATATTTGAAGAAGGTTAGAAAGTGT 5141 30 100.0 35 .............................. AAAGAAAATGCTAAATGTGCAGGTTTTACTTCTTC 5076 30 100.0 34 .............................. ACAATATAAGTATCTAACTTACTTGAACCACTTT 5012 30 100.0 37 .............................. TATAGTTTGCTGTAGCTTCTGCTATTTTCCCAAATAC 4945 30 100.0 34 .............................. ACTTCTGAATTAAATTTATAAGTTTTAGATGTAG 4881 30 100.0 34 .............................. GCACTTAATGCTCTCATTTTAGTAGCAGCATCAA 4817 30 100.0 36 .............................. CTATCTACAAGTTCTTTAGAATAGCCTTTCCCTATA 4751 30 100.0 36 .............................. ATGGTGTTCCTGCTAATATTCCAGCTATTCTACTAC 4685 30 100.0 34 .............................. TTTCGACTTTCCTCCCATGCTTGCAAGATATTTT 4621 30 100.0 37 .............................. GTTATACCACATGTTTATTACAGGATGGCAAGTGGGT 4554 30 100.0 36 .............................. GGAGTAGAGTATGCAGAGTAAGACTGAAATTTGCAC 4488 30 100.0 36 .............................. TTTTGGGAATTTTACACAACCGAGTGGCGACATCGG 4422 30 100.0 35 .............................. CATTTCCCCAATTCCAATAATCACAACTCTATTAA 4357 30 100.0 35 .............................. CTCTGTAATGTATGTCATAATGTTTTGCATCCAGA 4292 30 90.0 0 .......A....................TG | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.7 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAAATGGGTAAAAATTTTAATTATAATTATGCATTTCTTTTTTATGATGTCAATGAAAAAAGAGTAAATAGAGTGTTTAAAACCTGTAAAAAGTATTTGTCACATTTTCAGAAGTCTGTATTTAGGGGAGAGCTTACACCAGCAAATTTTATATTATTAAAAAAGGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGCATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTGGGAAATCCACATGGTTTAACAGGAGAAGACTTAATATTATAGATAAAAGTTTTACCAGGTGATTTAACATAGGAATGTACTCTAAAGTATTGAGTTATAAGGGTTTATGTCCTGTTCTTAAATATAGTTTTCCAAAAGATAAATCGCCTGGTAAATTTTCAATGAAACATTGAATTATCAATGGCTTTATGCTATCCTTAATTTTAAGGAATGTTGATTTTACAGTG # Right flank : AGAACTTAAAGTTCAGTTTAAAAAGGTGGATAAAAAAAGCAATATATTAAACATCAATAATATAAATTATGTTGTTAATAAATAAATTATATTAAAATTTTATATAAATATATGGTATAGACTGTTGATAATGTGTTTATCAACAGTCTTTTTGTATTACAACTAAAATATTATGGTAACTTTTTTACTTACACCTTTAAACATAGCATCTATCTCCCCTTATGTATATTATCATAAAATATTGACAGGGATTCATTAAAATAATATAATTATACTAAACATATAGGAATACTATGAAATGTACAAAATAAATATTTTTATTATTAAAGGTAAACCTATATAAAGATATAAAAATAAGAAAATCGTGGTGATTATATGAAAAAGAATATATACATGGATTATGCAGCAACTACCTATATAAAAAAAGAAGTAATAGAGGCTATGATGCCTTATTTAACTGAATACTATGCTAACCCATCTTCTGTATACAATATAAGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 15960-15614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNT010000005.1 Clostridium cochlearium strain N22 No.22_ctg005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 15959 29 100.0 37 ............................. TCACAATGTGTGTAGTAGATATAATTAGGGAGGATGA 15893 29 100.0 37 ............................. TTTATTTTTTATCTGATGCAAGTTATAATTTTGTTAC 15827 29 100.0 36 ............................. TACAGTTATTTTATCTACTAACATTTTTACAATTTT 15762 29 96.6 38 ...........................G. TTTAATTATTGGATATACTAAAAATGGTAGGAGATATC 15695 28 82.8 23 A.....T.T.......T.-.......... AATAGTCTAAATTGTAATAGTAT T [15680] Deletion [15645] 15643 29 75.9 0 .C.T...C.......GA.....T.A.... | A [15617] ========== ====== ====== ====== ============================= ====================================== ================== 6 29 92.6 34 GTTGAACAATAACATAGGATGTATTTAAA # Left flank : TTTTTAGGATTTACTAAAGCAGCCCATGCATTACTACCATTACCAATAATGGAGTTTTTCCTATAAAGTATATGCCTTGCAGAGATTTATATAATGGATTTGGAATACTAACTACTTGTTGTAATGGTCTTACCAATGATTCATGTTGGCATAAATCATTTTTATCTAACATAGTAACACATCCTTTTAAATATAAACTATTTAAATTATTTAATAGATAAAAATTAAAATTTTATCTATTAGTATATTGTATTGATATAACTCAAAAAAGTTGTAATATTTTAACGAATATTAGTGAAGGATACAATATTATAGATAAAAGCTTTACCAGATGATTTAAAATAAAAGTATATTGTAGAACATTGATTTAAAAGGATTTGATTAGCTTTTTTAAAATATTTTTGCAAAAAATTAAATCGCCTGGTAAATTTTCAATGAAACATTGAATTATCAATGGCTTTATGCTATCCTTAATTTTAAGGAATGTGGATTTTACAGTG # Right flank : ATAATATTATGCAAAAGAAATTTACATTTTAAATCTAGTTATTAAATTCAATAGTATAAATAGTAATGGTTTTGGTAATGATATATATCACAATAATAAATATAAAAATAATTTAAGTATATTATGATGGAAGTTAAAGGAGAGAGAAATGAAGAAAAAATTAAAATTGTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGGAAGGAGAGGAATTGATGGTATCATTTATATAATTGAATTAACTCTAGTTATTACATTAATTTTAAAAATCTTTCAATTTATAAATTGAAAAATCTACTTTCTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAAGATAAAGCATTATGGTAAAATTTATATTATAATGAAAATATAAGGAGGTGAAAAAGTGAAGGTATATGAGTTGACACTAAAAGTATTTTTACTAAAAGATATTAAAAGTGATGAAAGTTTAGAGAAAATAGCAAATATAAT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //