Array 1 44547-42028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGB010000085.1 Clostridium haemolyticum isolate 122-15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 44546 30 100.0 36 .............................. ATCCAATTGAAAATCCTAGAAATAAGTCCAATAAAA 44480 30 100.0 34 .............................. CTCAATAATGTAAACTATGGTTGGCTTACATTTG 44416 30 100.0 34 .............................. TATACATATTCCGAACATTTCATATCCAAATTAT 44352 30 100.0 37 .............................. TCTAAAGCTTTTATTTTAGCATTATATACATCTTCTA 44285 30 100.0 36 .............................. ATATTATCTTTTTTTATTTGTAATTCTTTGGCACTA 44219 30 100.0 35 .............................. ACCCTTATGTTTCCATCACCTGTTATTGCTTCTAT 44154 30 100.0 37 .............................. GGCGAAAAAGATGATATTCAATTCTTTTTAGAAGAAA 44087 30 100.0 34 .............................. TGAGTTCCTTTAGAAGTAATAATTCCGTTAACAA 44023 30 100.0 36 .............................. ATATCTGGAAAATCCTTTTGAAATAATCTGCTAGAG 43957 30 100.0 35 .............................. GAGCTTAGTTATTTAGTTAAGTTATTCATAGTAAC 43892 30 100.0 35 .............................. GCTATGGCTACAGTAGTTGTTAAACCTAAATAATA 43827 30 100.0 36 .............................. TCTGTAAATTTAAATATTCCTAAAAGTTTTTGACCT 43761 30 100.0 36 .............................. TTAAATTGCTTTCGTTCTGTTAGTTTCTTAAATGCA 43695 30 100.0 36 .............................. CTATGATGAATTAGAGGATTACATGATTGAAGATGC 43629 30 100.0 36 .............................. TAAGAAAATAATCCTGCCTTTCGGTAAGGTAAAAAC 43563 30 100.0 35 .............................. ATTGCGTAAAATCATCTTCATTAAGTTTCGTAGCT 43498 30 100.0 36 .............................. AGCTGACACACCTTACAATATTTCTGCAGACCAAAT 43432 30 100.0 36 .............................. TTATTTATGTTTACAATTGGTTGACAATTACTTAAA 43366 30 100.0 36 .............................. ACGCCTTGTTTTACTCTTTATATAGCTTAGTTGTCC 43300 30 100.0 34 .............................. TTCGCTATCCAGCTTATACTCTTATTTTCTCCAT 43236 30 100.0 34 .............................. TTAAATAATTTTCATAAAATAATTTTCATTAAAT 43172 30 100.0 35 .............................. TCTGTTTCGCATTCTAGGTCTAAATCTATATCTGT 43107 30 100.0 35 .............................. TAACAAACATTTCTCTTAATTCGCATAAAGTGTAG 43042 30 100.0 37 .............................. TTGTCTTTTACGGTGTATTTTGCACTTTCTGCGACAG 42975 30 100.0 35 .............................. CTACTACTTTAGTATTTAAGGGGAAAAGGCTAAAT 42910 30 100.0 36 .............................. AGCATTAACATTACTTTATACATTTTTTCTAATTGC 42844 30 100.0 36 .............................. ATATCCCCAAATTTTTGTCCTATTTGCTGAGATAAC 42778 30 100.0 34 .............................. TACCTCCATTATTTGTTATGCATATTGCACGCTA 42714 30 100.0 37 .............................. GATTTAGTAACAGATGCAATGTCAGCACTGGGACTAG 42647 30 100.0 36 .............................. TCTATAAGCATTTCTGTAAGCATCCCTACTTTATAA 42581 30 100.0 36 .............................. AAGCAAAATTTAACATTAATAGCTTTATAGATGCTA 42515 30 100.0 36 .............................. GGATGTGTAAAGGTGTGGGTTAGCTTAATTCTTAAT 42449 30 100.0 36 .............................. TTTCTAATAATGTTAATTAAGGGTAAAATCCCTTAA 42383 30 100.0 35 .............................. AAAGCAACATCAAAACTTTTTATGCGAGTTCTAGT 42318 30 100.0 35 .............................. CTTAAAAGTGGATGTTCCTTTTGTAAATCTTCAAA 42253 30 100.0 35 .............................. TAAACAAATCCTTTTTGGAATTTATAAGGTGTTAA 42188 30 100.0 35 .............................. AGTCCTAAGACTCTAAATTTTTCTGAATATGTACC 42123 30 100.0 36 .............................. TGAGGATCTTGAAATCTAAAGAATACGTATGGATCC 42057 30 90.0 0 ....................C...C.T... | ========== ====== ====== ====== ============================== ===================================== ================== 39 30 99.7 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : ATAAATAATGAGCCTTGGACTGATAAAATGAATATAGATTTATTAAAAAAGAGTATCAATGAGAATTTAATAAAGAAGATAAAAGTTATTCAGGATATAGACGAAACTTTAGAGCTTGATATGATAAAATGTATAAAATTAAAAAATAGAATGCCTATAGGGTGTAAATATAAACATATTAAATTATTAGGAAATAAATTTGAAATAGAAATTAAAGATGATGATATATCGCAATTTATGGCAAATATAGCTTTAGCAGTAGGGATTTTAGAAAAAAATTCTCTTGGTTATGGTTATTGTTTATATAAAAGTAAGTAAATTATTTTCCCAACCGATTAAAAAATTTAAACTAGTCATAATCCTTGATTTTACTGTTTTTGAGTGGAATTTAAGTTTAGAGAATTAAATTATTAAGAACGGTTGGGAAAAAAATAACGAAAGTATTTATTTTTAATAATTTTAGGGGTATAATAAAAATAAGAAATGGTTATTTTCCTATG # Right flank : AAAAATTAGTTAAATACTAATACAACAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGAGGTATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCAGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTCTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCCTCCTGTGGATAATATATCTACATTTGAATAAGGCAAAGCCTTTAGTAATATATTAAGATTGTTAGTTATTATAGTTAAATTTTTTCTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 23508-22886 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGB010000105.1 Clostridium haemolyticum isolate 122-15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 23507 29 100.0 36 ............................. CCTTGAAAAGGACTTCTATCTAATGTTAAATAAGCA 23442 29 100.0 36 ............................. ACCTTGTAGGAAACTATAAGAAGTAGAGGATAAAAG 23377 29 100.0 39 ............................. GCATTAATAAAAGTCCTGGTTAAATAATAAAAAAGCAAA 23309 29 100.0 38 ............................. CAAACTATTGATGCTTCCATAAGTGCATCGATGTTTGT 23242 29 100.0 36 ............................. GGTAGATTAATAAATCTAAAATCTCTACAATTTTGA 23177 29 93.1 40 .........G......G............ TTAAATCGAGAGGGGATTTTATTCCCGCTTGATGTGTTGC 23108 29 96.6 35 .........G................... GGCAAACCCTCCCAAAAGAAATTTTTTAATTTCTT 23044 29 93.1 35 C.........G.................. CCAGGATATTTTTCAAAAATAGCTTTAGCTATTTC 22980 29 93.1 37 ..........G.................C AGTTACAAAATATGCAATTTTCATCGGTACTATTTCT 22914 29 89.7 0 .........G......G...........T | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 96.6 37 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : ATAAGTATAAATCACAAATACAATTTATAATTAATAGTATTAGAGTGGGATATTATAATAAAAATGCTTCTGAAGAAATGCTAAGCAATGATGATACAGTATCAGTATTGCCTACTAATTTATTAAGCGAATATGCTAAATTAAGAGAAGAAAAAAGATATATAGAAGCCAACGAATTATTTGTAAATGCTAAAAAATATATATCAAAATATAATAAAGAGTTTAAAATTTATATAACATATAGTGTATACGATTGTAGAGGATTAGTTTATGAAGAAATTGATATAAATAACCAAATAATTTAATATCTTATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATATGTCTAGCTATTTATTATAAAAAATGGCTCACTGCAAAATTTAATGATTTTATACTAAAAATAAGATGAAAAATATGGAGTGATATAGTATAATAAAGATATGAAAAGAAAAATAGG # Right flank : GAGTCATTAAAATCTATCTTTTATGATAATGGAAATTAAATTAAAGAATTTCAAAATAACCGTTGACATAAATGGAAAACAGTAGTAGAATAATAAATGTGGAAAGAAAATATAAGGTTAGTATGGGTTGGAACATTTTGTTCAAGCCCTTTACATAAAAATATTAACAAAATTAAATTAAGTAAGAGGAGGAATTACATGAAAAATAATAAATTAGCAACACAAGGTCAATTGTTTAATTTTCAGGGAAAGGAATTTGCGGTAATTTTGATAAATGACGAACCACATTGGATAGCTAAAGAAATATGTGATTATTTAGAACTTAGTAATCCAAGTGTTTCATTGAGAAGTTTAAAAGAAGGAACTCAAAAGAAACATGTCGTAGGAGATATACTTAGTCAGTTAAAAAAACTGCCTAATTTAACCTTAGGTAGTCGAACTTCAGAGTTAAATTTGCTTACAGAAGCAGGAGTTTATAAGTTAATATTTAAATCAAGAAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 26124-25766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGB010000105.1 Clostridium haemolyticum isolate 122-15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 26123 29 93.1 36 .........A......A............ AGAGCATTTTTAATCTCTTGTTTTATAATTTCTTTA 26058 29 100.0 37 ............................. TATCTTGTACCTCTTGCTCATTATCAGAATTGGTATC 25992 29 100.0 37 ............................. CTTGTTATACCATGCCAAAGTCCATCAATTATATTTT 25926 29 100.0 38 ............................. CGCAGTAAATTTATCAATCTTTGTATAAGCCAAAATGC 25859 29 100.0 36 ............................. TTTTGCAATAGTGCTAAATTCCAATTCAGTAATTCA 25794 29 93.1 0 .........A..................T | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 97.7 37 GTATTAATTGAACTATGTTAGTTATAAAG # Left flank : CAGATACAATGCCTAAAGTTGTTATATTAGGTGAATATAAGTGGGGGAACAATGTGTTCCAAGGATTAATAAATAAAGATGGAATAAATATAGATGGACTTAAAGAAGTAATAGAGGAATATGAAGATTTTAGAAATAGTAAGATTTGGATAGGGGTTAGTAGTAGAATATTAAATGAAAATTTTCAAGGATTAAAGGAAAAGCTTGAAGAGGAACTGAAAGATTATGAAAATATTGAAATAGGAAGTGTGAAGAGTGCTTTTGATGGATATTTAGAATATTTAGAAAAAACGATGTAATATTATATTATAAATTTTGCAGTGAACCTCTAGTAATGTTTTGGGTTAATTTTACAAATGATACTATAACCTAGATATATCAATGGCTGTAGAGATTTACTATAAAAAATGGTTCACTGCAAAATCATACTATTTATTTGAATTTTTAATGGTCAAAATATGGGATGATATAGTATAATAGAGATATGAAAAGAAAAATAG # Right flank : AGATAATAAAATAAATAATCGTATAAAAAGAAAGGAAATAAAATATGAATGACTTAAGTGATAAATTAAAGAAATATAAAGCAAAATCAGATGGTACTACTATATGTAAACATAATAATGATTTGTTTGTAGCTTTAGAACAATTATTAAATATACATGATATATCTGACGAATTAAAATCTTCACTAAGAAAATGTATAAACTATCACGACATTGGAAAAGTTGTTGATGATTTTCAAAATAACATAGAATGTAAGCACAGAAAAATTAGACATGAGATACTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATCAAGATAGTTTAAATGAAGTAAAAAATAAATTAAATATAGAGACAGAAGATATAACAGAATATTTAAAGAAAATATGTAGAGGTAGCAGAGAAAACCATAAAAAATTACATGAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 78507-78997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGB010000086.1 Clostridium haemolyticum isolate 122-15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 78507 29 100.0 37 ............................. AACTTTAAAGGTACGCCAATACCACTAAAGCCGTTAG 78573 29 100.0 36 ............................. TATCTTACCCTTTCGCTCCCTTTCCTTACCCCTTCA 78638 29 100.0 34 ............................. GTCACAAGTTCAATATCTTCAACATCATTTTTCA 78701 29 93.1 39 ..........A.....G............ ACTGAATACCATATGTTTCAGCCATACCGTCTAATCATC 78769 29 93.1 38 ..........A.....G............ ATAACTATTTCTTATTATATAGTATACCAACTCTATAT 78836 29 89.7 37 .........GA.....G............ TCAGATTGTGGAAACACTATTACTTGTTTAATTTCAA 78902 29 86.2 37 ....C...A.A.................C AGTATAATGAGAATAGTAAATAATAAATCTACATCTA C [78910] 78969 29 86.2 0 ..........A..C.........TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 93.5 37 GTATTAATTAGACTATATTAGTTATAAAG # Left flank : ATTATACGATGTAATTACATATACGGATAACTTAAAAACAATAGAAAAATGTAAAGATGAGATTTTAGGATATGAAATAGCAAGTATTGATGATCTTAATAGTAGCGAAGTATTTGATGATACTTTTGGAGTTAATACACTAAGAGTCAAAGAGGGAGTAGTTACATATAAGAGACATTTAGTTGGATATGATGGCTGGGATATTGAAGATTATTTAGAAGTTGGTAAGTGGGAGTTAGTTTAGATAAATTAATAGATTTAGGATTAACTATACCTCATTTTGAGAGTGCTTAAAGGTAAAAACAAATAGAGATTTGCAGTGAACCTCTAGTAATGTTTTGGGTTAATTTTACAAAAGTGATTGTAAGGTAGTTATATCAATACGTCTAGAGATTTACTATAAAAAATGGTTCACTGCAAAATTGCACTATTTATTTGAATTTTTAATGGTCAAAGTACGAGATGATATAGTATAATAAAGATATAGAAAGAAAAATAGG # Right flank : GAGGATTAACCTTAAAAGGTTATTCCTCTTTTTCAATAAAAAAATCATAAATATTAATAACTCTGTGGTAATTAGTGAAGAATTATTATATAATAGCATTAAAAGGTAAATTTTATTTATAACTGATTGGAGATGAAAACATGAAAGGTAAAAAAACAACAATAGCTATAATTGTTGCGAGTTTGTGTTTGATAATAGGGGGAGTTTATTTTAATAAAAATTATAGATTTACTTGCTTTGATTCAAAACAAACATATAAAAAAGAATCTATACAAGATTTGAATAGATATTTATTAGATGCTGTAATATCAAGAGATTCAAAATTGTGTGAAAAGTTTTTAACAAGAGGAGCAAATCCTAATATTCCATTATCAGATGGAGATAATATATTTTATAAAGCTTTATTGGGTGGAGATGAAGAAATATGTGAATGTTTAGTAAAACATGGTGCAGATGCTACTACCATACACCCTCATCCTAAAACTATATATGATAATAAA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAGACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTAAACTATGTTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 4845-5310 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGB010000094.1 Clostridium haemolyticum isolate 122-15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4845 30 100.0 37 .............................. ACAGTGCAATTAGACCATTCTGCGTGATGTAAAAATA 4912 30 100.0 36 .............................. TTACTTAATATTTGCATTTTCTTTTTTCCTTTTACT 4978 30 100.0 36 .............................. TTTACTAGATGCTTTTAGATACGCTATGGAAGCACT 5044 30 100.0 35 .............................. GCAGCTATATTAAACAACTAATCGAAAAGGATATT 5109 30 100.0 35 .............................. ACGGTATTTGACTATAATTTTTAGAAATCTCTTGT 5174 30 100.0 12 .............................. TAGTGGTAAACG Deletion [5216] 5216 30 90.0 36 .....C..........A............A ATTGGAAATATCGGAATATGTCTAATATCTCGAACA 5282 29 73.3 0 .............T....-.T.AA..C.TA | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 95.4 33 GTTGAGAATCAACAAAGGATATGTTTAAGC # Left flank : TAATATACTTAATAAAGATAAAGAATATGAGTTTACTGTTGAGGATGAAGTTATAGCATATGACCAGATTAAAAAACTTTATGAGGCTATGGATAAACTGGAACCATTGGAAAGGGAGATTATTAGTAGATATTATATTAATAATGAAAAATTTAAGGATATTGCAGAAGATAAAAAGCTTTTATATGATAGGACTATTTATTTGAGGAGAAGAGCCATTAGGAAACTTAGAGGGATCATGGAAAAAAAACAATAAATTTAAAATATTATCATATAAAAATTGAATAAATATAATCGTATGTGTTAAAAATATAAATAAAATTATTACCAACCATAAAGGTCGACTTAGCGTCCTAAAATTGAGTAGTACCAATAAGTCTAATAAGATTAGCATGGCAACTCTCAGTAAGCCTCAATTTGATTGGGAAGCTTTGTGCAGATGCTAGTAATAGCAAGGCGTACAATGATATATCCATATTTAAAAATGGCTTAGATACAGA # Right flank : ATAATAAATAAGTTTAAAATTAGTGTTTATTGGAAATATTATAAATATATATAATATTTTAAGTAAGGAAGATAAAACATGAATAAATGTATAAAAGTAGCCATAAAGAATTGTAAGGAACTAGATTATAAAGTTATGAGTGAAAAATTAAGAAATATACAATACTTAACATGTAAAGCTAGTAATAAAGCCATGCAAATGTATTATATGTGGGAGAATCAGAAAATAGATATTAAGAATAAAACAGGAGAATATCCTAATGATAAAGAATTATTTGGAAAAACCTATAGAAATGTAGTTGAAGGTGAAATGAAAACTATAATGAATACCATAAATACATCTAATGTAGGTCAAACCAATGCAATTATAATGAAAAAGTGGAATACTGATAAAAAAGAAGTTCTATCATATCAAAAATCTTTACCTAATTTTAAATTAAATATGCCTATATACATAAAAAATAAAAGCTTTTCAATAGTAAAAGGTACAAGTGGATATGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCAACAAAGGATATGTTTAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 15285-16498 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGB010000094.1 Clostridium haemolyticum isolate 122-15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 15285 29 100.0 35 ............................. TTTTGCTTGAGATAAATAAATTTTAACATCATTGA 15349 29 100.0 38 ............................. TCTGAAATACTATTAATATTTATTAAAAATTGTCTTAC 15416 29 100.0 36 ............................. TTACGGCACCATTTAATTTTATAAACAATAGTGCTA 15481 29 100.0 38 ............................. AAGCTAGTATTTATAACTAGCTTATCTCCAGCTTGTAG 15548 29 100.0 36 ............................. TTAATTATACTGTCTTTACCTTTTCTAGCTTCTTTA 15613 29 100.0 39 ............................. TGCTATATTGAGTAGGCATATTGTAATCTGTACCTTTTC 15681 29 100.0 35 ............................. CCTGTGATTCGTACAGAAAATAACTTTCTATACCT 15745 29 100.0 37 ............................. ATAGAAAATAGAATGGCTTCTACAATAAGACACAATA 15811 29 100.0 38 ............................. CTATATCTTGACTAACTCTTTCGGATAGTACTTTATAA 15878 29 96.6 37 ............T................ TAGACTGGTTTAATATATAAATCTTCCTTAGCAGCAA 15944 29 96.6 36 ............T................ ACTTATGCTCTGCAGGGAATATTCTTCCCTATCAAG 16009 29 96.6 37 ............T................ AGAAGCTGTGACAAATCATTTTTAGTATCATATGCCT 16075 29 96.6 37 ............T................ AAAAAACAAAACTATGGGAGAACTTCTTAATAAAGAA 16141 29 100.0 36 ............................. GAGAATTAAAAAGGTTGAAAAAAAATATTTTATAGA 16206 29 100.0 38 ............................. TTTTCATCTTTAAAGGAATAGGGTGCAAATGCTTGTAT 16273 29 100.0 36 ............................. TGAAAATTGATATTGAATATATAAAAGATAAAGTCA 16338 29 100.0 36 ............................. TTTATTTTCTTTAGCTTTAGCAATAAATCTTATTTT 16403 29 100.0 38 ............................. ATCCCAATCTAATTTAGAATCTTGGGACTGGTCTACGT 16470 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 99.1 37 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : TAATTATGAAGAAGGACAAAGAGAATCTCAAGCTGATTTTATATGCAAAAAATGTGGTTATAAAGTTAATGCTGATTATAATGCAGCTAGAAATATCGCTATGAGTAATAAATATATAACAAAAAAAGAAGAAAGTAAGTATTACAAAATTAAAGAAAGTATGGTATAATAAAACATAGTTAAACTAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGAAGTTTTTTCTACTCGGCAAGGGTTAATCTCGATTGTTGTGTTACCGATCGAGCGTTTCACAAAATGCGAGAGAAATCTCGCATTTTTAATTTTGCAGTAAGGCTAGTTTTTATATAAATATGCTATAACCATTGATATTGCTAGGCTACAATAGGTTTTATTAAAAAAGCAAAAAACATTACTGAAGGTTCACTGCAAAATAGTGTATTTAAGTGAAAGTGAGATTGCTTGTAAAGCTAGGAGTATCAATATATTTATAAATTTCAAAATTTAGG # Right flank : TGAGCATAGCAATAAATTTTGTTTCATTTTGTTTGAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGGATACGTATTATGAAATTTATCGAATCAATAGATCCTTTTTTGATGCAGTTGGTTATTGTTCCGCTAATAGTAATTGGATTAGGTGTTTTAGTAGCTTATAATATTAAAAATATATTAATTGGACCTTTAATAACATTGTTTTTAAATAGTTTATATGAAATTTGGTATATAAAACACTATTGTCCTGGATCAGAAATTAGTTTGAGTTCTTGGAATATTATTCTTCCAATGATTTCATTTACAATTTCTTTGATTGTAGTATTAATTAGAGAATAGGGTAATATTTAATAAAGATTATTTCTTAGGCTAGGTGAAATGTAAATAACCTGGATTTTCTTTAGTTGCAATAATATCAATACTAGGTTTTAGTTTAACTATGTGAAATAGAGAAGCAGAATATAAAAGCTGAAACTACAAACCATCCATCATGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTTAATTATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //