Array 1 420304-422652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025227.1 Actinomyces wuliandei strain 299 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420304 29 96.6 32 ............................C AACGGGGCCGACGTACAGAGGACGCTCGCACG 420365 29 100.0 32 ............................. ACTGTCCGTCTACATAGATCCGGCGCTGCGGG 420426 29 100.0 32 ............................. CTGACGCTTCATCCGCAGGATCGCGGACTCAG 420487 29 96.6 32 ............................C ATCCCCTCGCAGGACAAGGGAAGGCATCACCA 420548 29 100.0 32 ............................. GACGTCCTTCCCGGAGTCCTCCGGGGCGACGG 420609 29 96.6 32 ............................C CTGCCGTCGAAGGTCACCGCGTAGGTACCGGT 420670 29 96.6 32 ............................C CACACAGAGACACCCCCATCAGCGCACCCCGT 420731 29 100.0 32 ............................. GGGGACTGTGTAGGTGGGCATGTCTCCTCCTG 420792 29 96.6 32 ............................C CTGAGGAGCCGCGAGCGCGAGCGCGTGATGTA 420853 29 96.6 32 ............................C GTGAGCCGATCGAGGAGGTTACGGTCGCTGTT 420914 29 100.0 32 ............................. ATCCGGCGCGCTATGCTGCACTCCGGCCGGCA 420975 29 100.0 33 ............................. GGCGTGGGCAGGGACGTTGCCGACGAGCTGCGC 421037 29 100.0 32 ............................. GTGGTGCTACCGGTGAGGCATGAGTGGTTGCA 421098 29 96.6 32 ............................C CAAACCCCCCGGAAGTAGAACCAGAAAAGAAA 421159 29 96.6 33 ............................C ATCGGCACCACGCCCGCTACCCGAGCTGTCAGC 421221 29 96.6 32 ............................C GAGATCCTGGCCGAGGACGGCGGTGTCAGGGG 421282 29 100.0 32 ............................. ACGTACTTGGTGGGTGCGGTGATTTTCTCACT 421343 29 96.6 32 ............................C GCTGCGACGAGCTGGTCCGGTGCGGGCTCGGC 421404 29 100.0 32 ............................. GACGACAGCGAGACGGAGCGGCTGCTGGCGGC 421465 29 100.0 32 ............................. AGGCGCAGCTGGCCGAGCTCGTGGAGGCGCTG 421526 29 96.6 32 ............................T GGAGGCTCGGTGGGGGCGGGGGCGCCGGTGGT 421587 29 100.0 32 ............................. CCGCACCGTCCGAGACGACGGGCTTCAGGTAC 421648 29 96.6 32 ............................A AAATCAGCTGCGAGGGGGACGCGCTACGCAGG 421709 29 96.6 32 ............................A ACCTGACCCCAGTCAATCCCGGCGACCCAGGA 421770 29 96.6 32 ............................C ACGGCCCGCCTCATCCCGGACACGGAACGCGA 421831 29 100.0 32 ............................. GGCAGGCCCACCCTGAGCGCGGACCTGATGGC 421892 29 96.6 32 ............................C GCCGTGATGAGCGGCTACGGCGTCACGACCTT 421953 29 96.6 32 ............................C GTGAACCGATCGAGGAGGTTACGGTCGCTGTT 422014 29 100.0 32 ............................. CCGTCGATAATCGCCTTCACGGTGGGTGAGGC 422075 29 96.6 32 ............................C GGGTGGCCGAGCAGCTGGTCGTCCACAGCCGT 422136 29 96.6 32 .....A....................... CCTCCCGAGAGCGTATGATCGGGATCACGGGC 422197 29 100.0 32 ............................. GAAGGACAACTTTTGTGACTACTATCGCTGTC 422258 29 100.0 32 ............................. GAGACCAGAGCCATGGAGGAGACCCTGGAGCA 422319 29 100.0 32 ............................. GCAGTCCAGAAGATGCCCTGGCTGCGCCCTGA 422380 29 100.0 32 ............................. GTGACGCGCTCGACGACGGTGTGCTCGCCGTC 422441 29 100.0 32 ............................. GTCTCCGCTACCGGCGTCCCTGCCTCTCGGCG 422502 29 96.6 32 ............................C GGAGGAGAAGGATGATCACTGTGGAGGAGGCT 422563 29 96.6 32 ............................C AGGGTCCTCACGCTCGGTACACGCACGGCTCA 422624 29 89.7 0 ..........................TAT | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.0 32 GTTGACCCCGCACGCGCGGGGATGATCCG # Left flank : GGTCATCGCTGGGGGCGTCAACTACACCGTGCTGAGTGACGAGGCGGAGGGCGGCGATCCCGGGTGGTAGTGATTGTGCTGTCGGCTGCACCAGCGGGGCTGCGAGGGGCGCTGACCCGATGGCTGCTGGAGGTGGCTCCCGGGGTGTTCGTCGGGCACCTGTCCGCCAGGGTCCGCGAGCAGGTGTGGGAACTGGTCGAGGCCAACATCGGTGACGGGCGTGCCCTGCTGGCCTACTCGGCACGCAACGAGCAGCGCTTTGCAGTGGTGTCCCTGGGGCACGAGCGTGACCCTGTGAACGTGGAGGGCTGCCTGGTGATGCAGGCGCCTTACAAGGATGTGAAAGAGCAGGCTGCCCTTCCTGGTGCTGTCAAGGCTCCGAAGGAGTCCTGGTCAGTCGCCGCCCGACGACGTCGCTACCGCAACGCTACCGAGCGGGCCCTAGGTCAGCAGTGAAGGCATATGGCCTGGTTGCGTGGTATCGTCGCAGGTCAGGAAGT # Right flank : TCAGTCACGGCGACGTCTGTGCGTGTCGGCTGGGCGTTGGTGGGGTGCGTACTCCGTTCCGGGGCCTTTGTGTGTTTAGCCGGGCCGGGTACGGCTAGTTGGGGAGACGTATTGTAGGCAGTTTCAGCTTGTAGGCAGTTTCAGCCTTTCTAATAACCGCCTCAGTTGGCCCCGTCACCCTCCTGAGCGTGCTGATGACCGTCGTGCTGTCCCCGCTGATGCGCCCGATGACGTACAGGCCCGGCCAGTGTCCCACTGAGGAGTAGGCCAGGACGAGTACCTTGTTGGGTGTGTACCAGGCGATGTCGCCAGCCTGGGGCGCGGCGGCTGACATCCCGGTCACGTCCAGCGCCTCGGGCAGGGCGGCCAGGATCTCCTGCCCGGCGTAGTCGGAGAAGGACACTGTGACGGGCAGCTGGCGCAGCAGGGAGCGGCTGGCTGGGGAGTCGTCCAGGGTGGCTGCGAGGAGGGAGCCGCCCAGGGTGATGGTAATGGGGTGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1389665-1379441 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025227.1 Actinomyces wuliandei strain 299 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1389664 29 100.0 32 ............................. CCAGGACGGTGCTGGGAGTGGGCTACGAGGAG 1389603 29 100.0 32 ............................. TGGCTGTACATGTCGGGCAGCTCGCGCCAGCG 1389542 29 100.0 32 ............................. CATTGTGTTCGCGGACTGCTGGGCCATCGCCT 1389481 29 100.0 32 ............................. GTGTGGTCGAGAAAGCGCTCACGGAATGCTCT 1389420 29 96.6 32 ............................C GCCTACCCAGTCACCAAGGCGCTCCTGGACGG 1389359 29 96.6 32 ............................C CCCGCAGCACTTACCAGTGACAGGACGCACAG 1389298 29 96.6 32 ............................C CAGGAGGCCCTCGACGAGGACTACGCCCAGGA 1389237 29 96.6 32 ............................T CAGACCCCGAGGAAGACGAGGGGCCTGATTGA 1389176 29 96.6 32 ............................T GCCGCCAAGTCACGCGGAGCCGTCGCCGGATC 1389115 29 96.6 32 ............................C ACCTCATCCGGCTTGATGGGGGGTACAACGAA 1389054 29 100.0 32 ............................. AGGCACGGGGACAACTGGTCGAGGGTTACCGC 1388993 29 100.0 32 ............................. CCAACATGGCCCGTGCCCACGCGTATCAGGCC 1388932 29 96.6 32 ............................C CTGCACCGGTCGCCGTCGCCCCTCGACCCGAC 1388871 29 100.0 32 ............................. TACTTGGTCTGCCGGTACTCCAGGTACTCACT 1388810 29 96.6 32 ............................C CGGGTCAAACGCAAGTCGCGCTTGGTCTTTTG 1388749 29 96.6 32 ............................C ACTGATCGACCGTGTCTGGGAGGCGGCTCAAC 1388688 29 96.6 33 ............................A CGTCTTCTTCGGCGAGCCCGCCCTGGACGTCCA 1388626 29 96.6 32 ............................C CACCCCCGGACAGCCAGTGACCTCCAAGGCCG 1388565 29 100.0 32 ............................. CCTCGCGAGGATGTCGCGAAGCCTCGCGAGGA 1388504 29 96.6 32 ............................T ACCGGCGAAGGTACCGTCGTGCTCCACGATCT 1388443 29 96.6 32 ............................T GACACCTCCCCACACGTAGGGGGTGCCCATGG 1388382 29 100.0 32 ............................. ACGGACACCTCCGACTCGCCCTCCTCGGTCAG 1388321 29 96.6 32 ............................T GTGGCCGACTGGGAGCGGCAGATCATGGAGGA 1388260 29 100.0 32 ............................. TTGTACACGTCCCGGCCGGGCGTGTACCCGGG 1388199 29 96.6 32 ............................C GGCGTCGTCGGGCTGCCACACGACCTCAGTGT 1388138 29 96.6 32 ............................T GTTTGTCTCATGGGTGCTTGACCGTATTGGAA 1388077 29 96.6 32 ............................C AACATAGACGTAGACACCAACGGCCCCTACGT 1388016 29 100.0 32 ............................. TATATTGCTCATATGAGCAATGTGCAACCCAC 1387955 29 100.0 32 ............................. CGCACCTGCGATAGCAGCCAGGCAGCCGAAAA 1387894 29 96.6 32 ............................C AAAGTCTGTAGGCATTTTTCCCGCCACTCCCA 1387833 29 96.6 32 ............................C TCTCCGATGGCCTTGAGCACCTCGGCGGCCAC 1387772 29 96.6 32 ............................C CTCCACCGCCGTGTCGAACTGCACATTTCGAC 1387711 29 96.6 32 ............................C GGCCCGCGTCTCATGAGACCAAGCCATGTCCC 1387650 29 100.0 32 ............................. TCCCGCCAGCCCGACCAAAATCTCCCGTGATA 1387589 29 96.6 32 ............................T TTTACCAGGGATAGCCTTCGCGATGCTCTTCC 1387528 29 96.6 32 ............................C CCCGGGTCCTCGGCGGGGGCTGGTGCCGGGGG 1387467 29 96.6 32 ............................T AACTCAGATGTCTCAGACATCAGGATAGAACC 1387406 29 100.0 32 ............................. CCCATAGGAGATCCCGCTGTGCCTGGGAGAGT 1387345 29 96.6 32 ............................T AATTCAGGCGATCTGGGGAGTCCTGGTCGCCG 1387284 29 96.6 32 ............................C CAACCAGGATCAGGAGTGATTATGTCAGGACA 1387223 29 96.6 32 ............................C GCCCCCTTCTCTGTCACCTCGCCGTGGGAGTC 1387162 29 96.6 32 ............................C CTGGTCGTCCCTCCAGTCCCCAGGGAGTCCAG 1387101 29 96.6 32 ............................T CTGACCTCACAGACCCCCGATGCACAGACCCC 1387040 29 96.6 32 ............................T GAGATGTCCCCGCGCTTCGGGAAGTCCTTGCC 1386979 29 96.6 32 ............................C AAGACCGCGAACCAGAACCAGGGAGACTACCG 1386918 29 100.0 32 ............................. GACCCCGAGGAGGAGACCCCCGCTGCTGAGGA 1386857 29 100.0 32 ............................. CGGGCCGCGTCGAGTTGGAGTACGGACCCGGC 1386796 29 96.6 32 ............................C TCGAACCTCGTCGGCCGATCTCGTGCTGACTT 1386735 29 100.0 32 ............................. GCCGACCGCAGACGACGGGACCCCGGCAAACT 1386674 29 100.0 32 ............................. GCGTCACCGATGTCGTTGGCGACCTTCTCACC 1386613 29 96.6 32 ............................C TGGGTCGTGGCCGCCGGGCGTGCTCCCTGGGC 1386552 29 100.0 32 ............................. ATGTTGCTCGTGTACTCGATGGCGGTCATTTC 1386491 29 96.6 32 ............................T GGCGTGTCCACCGGGGAGCAGGTAGTCCTGGT 1386430 29 100.0 32 ............................. ACCCCGGGGTGGGGGATAATCAGTGCGGGGCC 1386369 29 96.6 32 ............................C CTGATCAAGGTCTTCGGCGGAGCGGTGGGGGC 1386308 29 100.0 32 ............................. TTGCCACCAGGTCACGCAGCGTCTCCGTGGCG 1386247 29 100.0 33 ............................. TGCCGCATGTCGCCACACACTCAGTGTGTGGCC 1386185 29 96.6 32 ............................C CCCGTCACGGTCAGGGTCACTAGGACCAGGAC 1386124 29 100.0 32 ............................. TACCTTGACGTCCACCACGAGGGGGTGCCCGT 1386063 29 96.6 32 ............................C GCGCCATCACCCAACGAGCACAGTGAGAAAAT 1386002 29 96.6 32 ............................C TCCAAGCCGACGAGGCGGGGCAGTACGTCGTC 1385941 29 96.6 32 ............................C ACCCCCGTCGACACCCTCGCCGCCTGGTGCAC 1385880 29 100.0 32 ............................. GATCCGTGGGGACGCCTTGCTGGTGTACCACG 1385819 29 96.6 32 ............................T CCCGCTCGGAGCTCCACGGCTCGCAGCGCGCC 1385758 29 96.6 33 ............................A GGCCACCGCCTCCGGCTTCGAGTCTGCGATCAA 1385696 29 100.0 32 ............................. AGGCCGACGTACGAGAGCAGGAGTGCGAAGGA 1385635 29 96.6 32 ............................C CGGACGCGAGGCTTGGTGATAAGCAGATTCGG 1385574 29 100.0 32 ............................. CAGAGGCCAGGAGAGCCCTGCGAGCCCTCAAG 1385513 29 96.6 32 ............................C AAATATGCCATTCTCTTCTCGCTCATCGGCAT 1385452 29 96.6 32 ............................C TGTTTGACCGGTGGAGGAGCATGCTCCGTAGG 1385391 29 100.0 32 ............................. GCGTGCCGGTTGCTGGCGTCCAAGATCCAACG 1385330 29 96.6 32 ............................A AGGACCTGACCCCACTAGAGCACGCAGAACTG 1385269 29 100.0 32 ............................. TCGCGCTCGGTCTCGACCTTGACGGTGATTCT 1385208 29 100.0 32 ............................. CAGGCCTTCTTTATCTCGGCGAAGACGTCCTG 1385147 29 100.0 32 ............................. GGGAAGAAAATGCTCTATTAGACGGAAGAGGT 1385086 29 100.0 32 ............................. TACAAGAAGTGGTCAGACAGCAGCGCTGGAAG 1385025 29 100.0 32 ............................. ATTCGCTGCAATAACCGTGCCCAGGCCAATAA 1384964 29 100.0 32 ............................. GACAGGCTCTCCTCGCGGTGGGTGTAGGTGGC 1384903 29 100.0 32 ............................. GAGATGATCCGGCCCATGCTGGTCGGCCCCTT 1384842 29 100.0 32 ............................. AGACATGAGGTTCTTTTACGCGTCTACCGAGA 1384781 29 96.6 32 ............................C TTCCGGGGAAGTTGGAGCGCCGACTCCATCGT 1384720 29 96.6 32 ............................C GACATGCCTGACGCCTTGTACGAACCTGGCGA 1384659 29 96.6 32 ............................C TAAGGGGACCGGATGGAGGGACCTTCTGCTGC 1384598 29 96.6 32 ............................C TGGAGCGTCACGAGCCCCCGAGGCTGTAGAAG 1384537 29 100.0 32 ............................. AAGTACGCCACCTTCGCCGACATGAGCGTCCC 1384476 29 96.6 32 ............................C ATCGGGGTGTCTACCCGGCATGAGGTGACAGC 1384415 29 100.0 32 ............................. AGGGCGACGCAGACTATGCGGGGTCAACCGCG 1384354 29 96.6 32 ............................T GGCGACGTCGATCCACTCGGACTGTGAGGCGA 1384293 29 100.0 32 ............................. TGTTGTGAACGCGACAGCGCTTGTCACTGGGT 1384232 29 96.6 32 ............................C TAGGGCGTCGTCGCCTGGTCCTCAGCCTCCCG 1384171 29 100.0 32 ............................. GGCCTCCCGCTGTTGTGGCGGGCCTCGGCGGC 1384110 29 96.6 32 ............................T GAGGGACCCCAACCGGGTGAGGAGCATCCTCT 1384049 29 96.6 32 ............................C TCATGGCGCACCCCTCCAGACCTCGGCGCCTT 1383988 29 96.6 32 ............................C AGGCCCCTGCCAGCGGGCACCTCGACGGCCGG 1383927 29 100.0 32 ............................. CCGCGTGTCGTGCGGATGGCCATTGGGATGGC 1383866 29 100.0 32 ............................. ACCCGGTCGTGTGGGTCTCCGAGGCGACCACG 1383805 29 100.0 32 ............................. ACCGTCCCAGATACCACCCGGAGCAAATGCGT 1383744 29 96.6 32 ............................C CCCGTGACGCCAGCATGAGACACCACGCGCAG 1383683 29 96.6 32 ............................C CCCGCAGCACTTACCAGTGACAGGACGCACAG 1383622 29 96.6 32 ............................T CACTCTACCCGCTAAGAGAAGTAGAGTGGCTT 1383561 29 100.0 32 ............................. AGCCCGCTCGACGTCCTCACGGGTGGCCAGGC 1383500 29 96.6 32 ............................C CGGCCGGTGCCTGCACTGGGACGGCACCGAGG 1383439 29 100.0 32 ............................. CGGTCCGGGGGATCCTCCGGCTGGTGGAGCAG 1383378 29 96.6 32 ............................C GGTGACGGGGTGGCCGACGTGTGGGAGCCGGC 1383317 29 100.0 32 ............................. CGGCTGCCAGCAGCTGGAATACAGTCTCGTCC 1383256 29 96.6 32 ............................C TGGGCGGCCAGTGTGGCTGAGGAGGCCGATGA 1383195 29 100.0 32 ............................. ACGGCGACCGTGCTGTCGGCCCTGTCCCGCGT 1383134 29 96.6 32 ............................C ATCACGACGTTCCTTTCCGACCTGTGGAACGG 1383073 29 96.6 32 ............................T TTTGTCAGACGTGCCCCCGTGTTGGCCAACTG 1383012 29 96.6 32 ............................C CATCTCATCTACACGCTGCTGGAACTCGGACC 1382951 29 100.0 32 ............................. AGGCTACCGAGGTTACCGGACGCCTTGGCGTT 1382890 29 96.6 32 ............................C AGTTGGATGTAGGCCGTTGCCAGCGTGTTACC 1382829 29 96.6 32 ............................C TGCGCCCCGGTACGCGCGATCGCTGACCCAGC 1382768 29 96.6 32 ............................C GTCGATCGGAACCGGGCTCCGTTCGACTGCCT 1382707 29 100.0 32 ............................. CAGCCGGGGGGAGGGCTCATCTGAGTTGTAGT 1382646 29 100.0 32 ............................. ACCACCCTGATCGACCGTGTCTGGGAGGAGTC 1382585 29 100.0 32 ............................. TGGTCATCGACCGACCGGTCCATCTCCCTGGA 1382524 29 96.6 32 ............................T CTTGACCTCCTGAATGCCCTTGAGGCGGGGTC 1382463 29 100.0 32 ............................. GCAAATGCGGCCTACCCACACCCAGCCATCAA 1382402 29 100.0 32 ............................. TCGGGTGAGAGGCCGGTGGCCTCTGCGGCTCC 1382341 29 96.6 32 ............................C CAGCGCCTTAACTCGTTCAAGGTGTTTCTTGA 1382280 29 100.0 32 ............................. CATTCAGGATCATCGCCCAGATGTCGGGGTCG 1382219 29 96.6 32 ............................C GCGTCCCAGATCATCCCCTGCGCGTCAAAGCT 1382158 29 100.0 32 ............................. GCATCACCATACTGACAGAGAACGAGGACGCG 1382097 29 96.6 32 ............................A AACCGGCTGGTCCCCGGCCGCCAGGTGGACGG 1382036 29 100.0 32 ............................. AACCCTGTTCCCCTGTTCCCCTGTTCCCCTGT 1381975 29 96.6 32 ............................C CTTGAGAGCGTCACTGGCCCGCGCCATAGTCG 1381914 29 100.0 32 ............................. TGCCCGGTAGATGTCGTCGGGCCGCCAGGGTG 1381853 29 96.6 32 ............................C CAGGAGGCCCTCGACGAGGACTACGCCCTGTA 1381792 29 100.0 32 ............................. GCCGCCGTCGAGCTGGCCAGGATAGAGGCCGA 1381731 29 96.6 32 ............................C TCACAGCCGCAATCACCAACCAGAAGAAAAGG 1381670 29 100.0 32 ............................. AAGGAAAGAGAGGAACCACCATGGACACTACC 1381609 29 96.6 32 ............................C CAGATCCTCGGTGTCGCGACCTTCCTGGCCCT 1381548 29 100.0 32 ............................. TGGGGTTGGGGGGCGAACCAGGAGAACCCCGA 1381487 29 96.6 32 ............................C GAAGCCCTCGGAAGTGTCACGGACGTTGGCCT 1381426 29 100.0 32 ............................. CCCCTGGCATCAGTACTCACCTGCCCCGGCGC 1381365 29 96.6 33 ............................T AATCCCCCAGATCGCAGCAACGATCGCGACCAG 1381303 29 100.0 32 ............................. TCTCTGGATCGCCCGCTCCCGTGAGTATGTCC 1381242 29 96.6 32 ............................C ATCGTCATCGCGCGGGGCCAGGAGACCGAGGA 1381181 29 96.6 32 ............................C GGCGTGAGGTCCTCACCGTCACTCATCGGCGT 1381120 29 96.6 33 ............................A GACGGTCATGTACCTGTCGACCGCGTGGGCGAT 1381058 29 96.6 32 ............................C CAGGAACGGGAGAAAAAGCCCGACGGGGCGGC 1380997 29 96.6 32 ............................C TACTCGACACACCACCCTCCAGTCTGATCCGC 1380936 29 96.6 32 ............................C AAGCGCCGTGGAGGCGCAGGCCGCCGCCACGG 1380875 29 100.0 32 ............................. GGCGATCCGGGAGATGGCGGAGCAGCCTCCCC 1380814 29 96.6 32 ............................C GTCGTCGGCGATCCCGAGCACGGACCGGTGCT 1380753 29 100.0 32 ............................. ATGGCCGTGTTTTAAAAACGGCCACCAAGATG 1380692 29 96.6 32 ............................C AGCTGGCCCACTCTGCCTACAGAGCCAGCCAG 1380631 29 100.0 32 ............................. GCCTGGAGCGACCTGGCGGAGAAGGTCCAGCG 1380570 29 100.0 32 ............................. AAGGGTGCTGTCGCCAGGGGTGCGTGCTTCTG 1380509 29 100.0 32 ............................. TACTGGTCGGCGTCGTGGGGGCGGTCGGCCTC 1380448 29 100.0 32 ............................. GTCCCCAGGCTTCGGGTCACGCACCCCCTCGG 1380387 29 100.0 32 ............................. TGACCCAGGAGCACGGGTACGACCCACCGGGG 1380326 29 100.0 32 ............................. GCGGCCCTGAAGTCTGTCGGAGTTGGCGGCGT 1380265 29 96.6 32 ............................C GCCGACCCGAGCGAGGGCGCAATCTCGGTCAC 1380204 29 96.6 32 ............................C CGGCTGTGCCCGCCGCTTGGGCTGATCCTGGA 1380143 29 96.6 32 ............................C ACTGCGTGGACCACCATCACCACGTTCCTCAG 1380082 29 100.0 32 ............................. GGCCTGACCTACGACGACGTCGCCGCCCTCCT 1380021 29 96.6 32 ............................C CTAAACGAGGTCCACACCACCACGGGGCGCAC 1379960 29 100.0 32 ............................. GCACGACCCTGGGTACCCGCCCCCTCCGGGGC 1379899 29 96.6 32 ............................C TCAACCCGGGGGCTCACGGCCCCCGAGGGGTA 1379838 29 100.0 32 ............................. TCCTCAGACACCTCCTGCCTGGCGGGAAACCA 1379777 29 100.0 32 ............................. GACCCGAGGAACCAGTCAGAAGGAGATCGAAA 1379716 29 96.6 32 ............................C AAGCGCGACGTCGTTGACGCCACCCGCGACGT 1379655 29 96.6 32 ............................C GCCTACCTCACCCTCGGCCCGCCACGAGGCCG 1379594 29 96.6 32 ............................C CCGCTGCCGTAGGTACGTCTCGACCCGGCCCT 1379533 29 96.6 32 ............................C GATGCGGCGCCGCCACCCCCTCCCTACGGGGG 1379472 29 86.2 0 .........C.....T.........A..A | A,A,T [1379447,1379452,1379461] ========== ====== ====== ====== ============================= ================================= ================== 168 29 98.0 32 GTGTTCCCCGCATACGCGGGGATGAGCCG # Left flank : CCGGACATGGGCGACCTGGTGCTGTGGTCTGAACTGGGCACGGTAAGCAGTGGCGTTAACTACGCGGAGGCCGAGCAGGAATGATGACCTTAGTCCTTAGTGCCTGCCCGGCAGGACTTCGAGGCGACCTGACCAAGTGGCTGCTGGAGATCAGCCCCGGCGTGTTCGTTGGGCAGGTGAGTGCTCGCGTGCGTGACTTGCTGTGGGAAAGGACTGTGGCGCTGTGCAAGGACGGTCGGGCTCTGCTGATCTTCAGCGCGGCCACGGAACAGGGCTTCGCCTACCGGACCCACAACCACGAGTGGGAACCGGTGGACTGCGACGGAGTGCTGCTGCTCCGCAGGCCAGTCCAGCAGAAGAGGCAGGTGAGACGCACAGGCTGGAGCACCGCCCGAGCCCAGCAGCGCTCTCGGCGCCCACGGTGGGCAGCACCACGCCCCGACACAGCCAAGTCGTACCAGAACGAGCTGGATCCAGGCTAAACTCCCAGGTCAAGAAGT # Right flank : AGCGCCCTTATGGCGCGCAGGAACAACAGCCTCTGAGCGTCTACGCGCACCCGTCAGCCGTGGGCATCCACCCACTATCGGGCTGGCAGCAGCCTGCGTGCTACGTGGGCGATGCGCTGCATGGCTCCCTGCGGCGCTACCCTCGACAGCAGGTCACGACAGAGAACGCTGCAAGAACTGCCTCGCTCAGATCCGGGTCCCAGCGGGAACGGTTCCCGGCGAACCCTCCTCCCTCACTACGGCGTCCCCGGTCGCCACCACACCAGCGCCAAAGGTCCAGTCGCCCTCCACGGTCAACGAGCTCGCCCCGCGCACGGAGGGGACGCCCTCAGGGAAGCGGGCCTCAAAGTCCCGGATGGTCTTGTAGTAGCGGGGGTCCAGCACCACCGTGCAGGCCTCCTGCGGCACCTGCACCAGCAGGCCGTCCTCGTCAACCTCGTAGACGTCGGAGCGCAGTAGGAACAGGTCGTTAGTGGTCTTGACCGGGAGGAACCTGCTGC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //