Array 1 824935-822588 **** Predicted by CRISPRDetect 2.4 *** >NZ_QITE01000002.1 Cronobacter sakazakii strain CS-4 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 824934 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 824873 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 824812 29 100.0 32 ............................. CCGCATCGGCTTCTGCCTGCTTCTGTTTTTTG 824751 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 824690 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 824629 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 824568 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 824507 29 100.0 32 ............................. GTACGTGACTGCGCGTAATTTATTCGCTACCA 824446 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 824385 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 824324 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 824263 29 100.0 32 ............................. CACCTGCGACCGCCGATTTTGATGAGGCGATC 824202 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 824141 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 824080 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 824019 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 823958 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 823897 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 823836 29 100.0 32 ............................. TTTTTTCAGTAGCAGGCGGATATTTTTAGCCG 823775 29 100.0 32 ............................. TTTTACGGATCAGGCGAGTATCTGCCCTGGCT 823714 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 823653 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 823592 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 823531 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 823470 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 823409 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 823348 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 823287 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 823226 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 823165 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 823104 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 823043 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 822982 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 822921 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 822860 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 822799 29 96.6 32 ...........A................. ACAGCTGCTGTTTAACCTGCGCTGCTGTGATT 822738 29 96.6 32 ...........A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 822677 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 822616 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : AACGCTGCCCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 476862-477068 **** Predicted by CRISPRDetect 2.4 *** >NZ_QITE01000003.1 Cronobacter sakazakii strain CS-4 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 476862 28 100.0 32 ............................ GATATTGCTGGTGGACGGGATCGCATCAGGCA 476922 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 476982 28 96.4 32 A........................... ACATTCCACTGACTGTCTGCATCAGACCCGTC 477042 27 92.9 0 .....................-C..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCAAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACAATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //