Array 1 92572-89981 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBWO01000133.1 Clostridium sp. C105KSO14 isolate C105KES143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 92571 33 100.0 34 ................................. CAGGTTACAACCGTCAGCCCGGCCAGAGGCATTG 92504 33 100.0 37 ................................. AGTGGATATTACGGACAAAGAGGGGCAGAGCGTTATA 92434 33 100.0 35 ................................. TGATTTCAACAAGATATATAACTATAAGAATCGGG 92366 33 100.0 33 ................................. ATCCCTAGCAGTTTATTTGATAATGCTGACTTG 92300 33 100.0 34 ................................. GGATAAGACCATGCGCACAGAGGGAAGGCTCCAG 92233 33 100.0 34 ................................. TCACAAACTTGCAGAGGTACAGTCACATTCTCAG 92166 33 100.0 37 ................................. AGTCGGTTGGTATGCAGTGGATTATACGGGCTGCATT 92096 33 100.0 34 ................................. ACGCTGCTGCTGGGAGAAAACGCATATGCTACCA 92029 33 100.0 34 ................................. AGCAGAGGGCAAACTTACAGAGACAGAAGCAGAG 91962 33 100.0 34 ................................. TTATCCCTATCATCATCTCTCATTGCATCCTGGA 91895 33 100.0 35 ................................. CTTTTACGGCAAAGACTCTTTTATGCACCCTTGCC 91827 33 100.0 34 ................................. CACCTGCGCCCCGACTTGGAGGGTGTGTCCATTG 91760 33 100.0 34 ................................. ATTAACGCGGCCCTGACTGCGTCCGCATTGACGC 91693 33 100.0 34 ................................. CCGGAAGATATTACCCATCCGGCCGACCAGCTAG 91626 33 100.0 34 ................................. ATAATCTCCATCTGGATTTACGCGGTCAATAGAT 91559 33 100.0 34 ................................. GTGTTAAACGGAACAGAATATGAAGTATGCGACA 91492 33 100.0 33 ................................. CATAGTCTTATCAATTTCCTCGATGTACTTCTC 91426 33 100.0 36 ................................. TGGATGATATTACACCATTTTTGAATAAGCGTGTAA 91357 33 100.0 35 ................................. CAAAATCCATCACAGTCAAGGGAGTACATATTCAG 91289 33 100.0 34 ................................. CTCCAAGTAACCACTTTTCATGGTTACAGTAACC 91222 33 100.0 34 ................................. TCATAAGGCAGCCGCCGTCCTCAATAAGGTCCTC 91155 33 100.0 33 ................................. TAAGGATGTACAAAAGGATTTACCAGCTGCAGA 91089 33 100.0 34 ................................. CTTCCTCATCCAGGACAATAATCCCCTTCCCATT 91022 33 100.0 34 ................................. ATCTGCCGCGCATCCGTCACAAACCCCTCATTCG 90955 33 100.0 34 ................................. CCCGCAATGCGCATATAGTTGGAGTACAACAGCC 90888 33 100.0 36 ................................. CATCTGGAAAAATACATGAAGCCGTAACGCCTAATG 90819 33 100.0 34 ................................. TTATCACATCAATCTGTGCCTGTAAATCTGCTAT 90752 33 100.0 33 ................................. CACCCACTTTTTTGCTATGTAACCTGTAATCAA 90686 33 100.0 37 ................................. CATATCTATGCCAATCGTTCGGATTTCCTCCGGTAAT 90616 33 100.0 36 ................................. CCCGCAATGCGCATATAGTTGGAGTACAACAGCCCG 90547 33 100.0 33 ................................. TGTATTTCATCGACCGCCTGCTCGTATGAGCTG 90481 33 100.0 34 ................................. TCCAGAACGTGCTTTTAATGGCATAATCAAGGGC 90414 33 100.0 35 ................................. TGTATAGGCTGCAGCTGCAACAGATGTTACCTGGG 90346 33 100.0 35 ................................. CCACCATTTTTTTACGAACAGCACATCCGCTGAAA 90278 33 100.0 33 ................................. TTCAAAACCCGCATATGCAGTTGCTATCTGTTT 90212 33 100.0 33 ................................. CCTCCATATTGGCTTACTAATACCTTTTTAGTC 90146 33 100.0 33 ................................. ATATGACCTAATAGACACAGAGGAAAATCGAAA 90080 33 97.0 34 .............G................... TTCTGGAAATTCTTAAAATCACGGTTATCCCAAT 90013 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 39 33 99.9 34 GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT # Left flank : AAGTCCTGGAATTTCCGGAGAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAAGCGGGAAATCTGGCAGCTGTAATGGAACGCCAGGGCAGGGTACTGCGCATTTACGATGTCAATGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCTATATATCCGGAACAAAAGAGGCTTGTTTTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCACTGCAGCATGCGGGATATATGCGTGAAATGAAGGATTATGTAGTGTATAAGTAGAGTGTGATTTCTGTGAGGCGGAATCCCATCAAACCAGGTGCGAATGCCAAGCTAACATGAAATGCCTGGGAGATTCGCACCTGAAAAACAGCGGAAAAGCCGTGAAAATAGGCTGGGTGAATGGATGGAGGAGGTTGAAATAAGGAGGGGAGGACATAATGCATAAAAAGTTAGGGGGATGTGGAGGGATTGTTGGATAGTTTTGCT # Right flank : ATAACATGCTTTATATACATATGCTTTTCCTTTCCACCACTGCTGGATATGTGGTTTATTTTAGCTGGCTGATTTCGTGATAGGCTTCCAGAATACCATTTTTGGCTGCTTTTTATACAGTATCAATATCAACCCAATACCAACACTCACCCAATACCACCCCAATACTAACACCAATTCTTAATCATGCAGAACCATTAGGCAATTGCGAAACTCACTGACCAGAATTTATGCACATCGTATAGGAATGAATCTAAATTGAATATATTAAGCAAGATATTTTGTGCAAGGTGAATATAAAAATTCAGAGTTTCGTAATTACCTAATGCAGAACCATTTATGAAAGGAGAGGGAAAAGCCATGAAACAGATGTCATTATTCGATGACAGAGAAGTATACAATCCCCTGGCCAGCAGGCTGCGTCCGGATGACCTGGATGGATTTGTGGGACAGGAGCATCTTTTGGGAAAGGGGAAGCTGCTGCGCCAGCTCATAGAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21168-21442 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBWO01000231.1 Clostridium sp. C105KSO14 isolate C105KES143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================== ================== 21168 32 100.0 28 ................................ GGTCTAAGTAATACCACTGTCCTCCCAG 21228 32 81.2 28 CCT............CT..............C CGTCCAGATAATACCATCTTCCATTAAT 21288 32 81.2 28 ...............CT....TT.A......C CGTTCATATAATACCATTTGCCGTTGAT 21348 32 81.2 31 ...............C.T...GAT....T... ACGGATTCAGATAATACCAGGTTCCGTCCAG 21411 32 71.9 0 CTT...............A...TA...CT..T | ========== ====== ====== ====== ================================ =============================== ================== 5 32 83.1 29 GGCCTGCCAGCCGGTGAGCATAGCGCCGCTGG # Left flank : TGACCGTAATACCTTCAGACAAGCGCTTTCCCAGGGCCAGACGTGTCCCGCGCACCTTGATGATAACGCTTCCGCTGCCTTTCTTATTCAATATATTCACCGGCGTCCCCTCATTGACCCCCAGGGCCTCAAGACGTCTGGTAATACTCTCATCCACCTGCACGCCCGATACAACATACCGGCCGCCGATTTCACACTCGTTCAGCTTTTTCTGCATTGCTGCCTGTCTCCTTTTGTAGTTACATTTTAACCATATTCATTGTATGCTTATTGCGAAAAAATGTCAATAAAAAGAGTTTGTTATGACAAACTCAATTTCAAAAAAGAGGATGCAGCGAATCTCTCCGCTGCATCCTTTCTATACGTTTCGGTTCTATTAATATTGATTTTAGGCTTTACTGCACCCAGGCTCCGGAACCATCCACATATTTTCCATCCGGCGTCCATGTATTATAATACATGGCTCCGTTGGTGCCCAGATAGTAGTACTTGCCATTGAT # Right flank : TTATTGAAATAATACCATGCGCCGTTAATCTGCTTCCAGCAGGATGCCGGATATCCGCCTGTATCATAAGCATACCACACGCCTGTACCGTCCTGCTCCCAATGCCCGCTTCCGCCATAGCGGCCAAGCTCATCCTCATCAATATACAGGGAGCTGGAATCCTCGGACCATTCACCTGTCTTATTGTTGTAACGGGAAATGGCCCTTACACGGAAGGTATAGTCTCCTTCCCGGTTAAAATAGCCTGCAAAGTTATAGGAGGTTCCTGTGGTGCTGACCGTAGTGACTGTCTTGTCGTCACGGAGGAGTTTCACATCGTAGCTCTTAGCGCCCTCAATCTCCTCCCACTCAGCCGTGGTGTCACTCCACTCCAGATCCGACGCGCCCTGAAGCTTACCGCCGATACGTTTTAGCTCAGCATACACCTCAATGTACTGGCCATCGTCATAAATCTTTGCTTTCTTGAAATCCGCATTACATCCGGAAAGAGAGAAATGGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.15, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTGCCAGCCGGTGAGCATAGCGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22838-23801 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBWO01000293.1 Clostridium sp. C105KSO14 isolate C105KES143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 22838 32 100.0 34 ................................ ACTACCTCAATGAATCTCGGATCCAACGTGATAT 22904 32 100.0 35 ................................ TATCCCAGTCTATGTCTCCATGGTGATGCGCCACC 22971 32 100.0 33 ................................ GCGTGGATTGGAGGCTACTATAACCGTGAGATG 23036 32 100.0 33 ................................ TGCAAAGGATGGGAAAATGCAAGAGGCTGCCGG 23101 32 100.0 33 ................................ TCCGGAAGGAGGGCTGATATGCATGTCATCCAA 23166 32 100.0 36 ................................ TAATACCATGTTGAACTGCGGGAACAGCTGTTTACA 23234 32 100.0 35 ................................ AATATGAAAATGGAGCCAGGGACAGAGGTGGATAT 23301 32 100.0 36 ................................ ATGATATTGACTTGACCCGGTCCCATGCTGTAATCA 23369 32 100.0 34 ................................ CCGTATATGCTCACTCACTGTCATTTTTTTCCCC 23435 32 100.0 36 ................................ GTCGTTATGATTGAAATACCATGTGGGCGAAACACT 23503 32 100.0 34 ................................ TATATGGAGATAGACCCAGACCTTGTTGAGCGGA 23569 32 100.0 35 ................................ CTGAGTGATGTGGTTGATTCCATCAAACAGTTGAT 23636 32 100.0 35 ................................ TGTGATGAGCAGATGAGCAAGGCCATTGTGGGTCA 23703 32 100.0 35 ................................ ATTAAAATATCCTGTAAAACTATTAAATCGTCGTC 23770 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 35 GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT # Left flank : GCTGGTACTGATTACATATGATGTGAATACGGAAACCGCCGCAGGCAGGGCCAGGTTGAGAAAGGTTGCAAAGCAATGTGTCAATTATGGCACCCGCGTCCAGAACTCCGTATTTGAATGTATTTTGGATAATGCCCAGCTGATAAAGCTAAAGGCGATACTGACAGATATAATTGATGAACAGACGGACAGCCTTAGGTTTTACAACCTTGGGAATAAACACACTACAAAAGTGAACCATGTTGGGATGAATAAGGGGATTAATGTGGAAGAACCGCTGATATTCTGACCTGGCCGCGGGCGGTAAAGCGGTATAAAGTATTTTGGTGCGAACCTGAAGCAAACATGGATTTACGGGGGGATTCGCACCGGAAAATTTGCACAATGAGAACGGATTTGCGAGTGTGCAGGGATGGTTGGCCGTGATTTGAGGGGGGTGGGATATGATTTGTTTGTGGAAATGTGATGAAGAATAGTAGTGGTTATTGTGTAGTATTGCT # Right flank : TCCAATCCTTACCACCTTCCAAAAGGAGAGTATGAAAAAAAGTCTGTAAATTGAGATCTTCTATGATAAGTTAATGAGAAAGGTAGGTGGATGTCGTGACCACCTACCTTTACTATACGGATGCTTTTGGATTCTGTCAAGATGTATTGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17479-17251 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBWO01000043.1 Clostridium sp. C105KSO14 isolate C105KES143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 17478 32 100.0 33 ................................ TTTTTCATTGGCCCTCCTTAATTGCACGGTACT 17413 32 100.0 33 ................................ GACATGAGTGTAAATAATTTTATCAATATCATT 17348 32 100.0 34 ................................ TTCGGGGTAGTCTCATAGCCGTTCACATAATAGC 17282 32 68.8 0 ......G.T......TC....CAAG..A...A | ========== ====== ====== ====== ================================ ================================== ================== 4 32 92.2 34 GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT # Left flank : TGACTACTTTGTGTACGGGCTGTTTTTCTCTTCTTGCCATAATAATAGGCCTCCTTATGATAATAGATTTTATCATAGAAGACCTAATGCTTAATAGCTATTTACAGAAAAACTTTCATACTCTCTCCAAAAGTCCCCGGCAG # Right flank : TCCGCCAATTACAGAATTACATCCAGTTGCCCTCTCCTCTGCCCTTTTCGCAAACGCCGCAATCCCTTTTGAACTGCAAAAAGGTTAGGTAAAACTAATTCCGTACAACAAAAAAGATGGGGCATGCCCCATCCCTTCCATAATCTTGTTAGAATGTACAAAGAATGCATACTTCCATTATCCCTTCCATGCCCGAATCTCTTTAAGCCCCGGCACCAGCACCTTAGCGCTGGTTTCCAGAATGATCCGTCCCTTTTCAGCTGTGGCGCCTGAGGGGTCCCCGCCGATTCCGATGGGTTTGCCGTCTTCTGTTTTCCAATCCTCGGATACCCAGCCAATGGATACATTTCCGTAAGGTTTCAGCGCCTGATTGTCTTTAAATGCAGTGGGAATTCCCGCCTCTGAGGTCTCTGACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATTTCACCTCCATGGAAGTCCCAGATATTTCCTTCTGAAATCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //