Array 1 2-213 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQAZ01000243.1 Escherichia coli strain EELTKB244 NODE_3602_length_17461_cov_16.970505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. TTGATTTTTGTCCGAAATCTCCGGCACAAACA 63 29 100.0 32 ............................. GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT 124 29 100.0 32 ............................. TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA 185 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : AG # Right flank : GNNNNNNNNNNATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAGAGTTCCCCACGTCAGCGGGGATAAACCGACGTAACAAAACAACAGCAAAATATTATCGACGAGTTCCCCACGTCAGCGGGGATAAACCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAATTTAGTTCCAGATGCTGCGAAAGAGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCTAGGATAAATTAAAAGACAAAATTGCAGCAAGAGTTCCCCGCGGCAGCGGGGATAAACCGATCGATATGTACGTTAGCGAGGGGATCACGCAGAGTTCCCCGCACCAGCGGGGATAAACCACCATATAACCCGTTAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 331-696 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQAZ01000243.1 Escherichia coli strain EELTKB244 NODE_3602_length_17461_cov_16.970505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================ ================== 331 29 100.0 32 ............................. ACGTAACAAAACAACAGCAAAATATTATCGAC 392 29 100.0 64 ............................. GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAATTTAGTTCCAGATGCTGCGAAAGA 485 29 100.0 32 ............................. AATGATTGATATAAATCTGTGTACGGTGTCCG 546 29 93.1 32 .........G..C................ CTAGGATAAATTAAAAGACAAAATTGCAGCAA 607 29 93.1 32 .........G..G................ ATCGATATGTACGTTAGCGAGGGGATCACGCA 668 29 86.2 0 .........G.AC...............A | ========== ====== ====== ====== ============================= ================================================================ ================== 6 29 95.4 39 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : AGAGTTCCCCACGTCAGCGGGGATAAACCGTTGATTTTTGTCCGAAATCTCCGGCACAAACAGAGTTCCCCACGTCAGCGGGGATAAACCGGCTCCGCCGGTTTGATCTCCGGTTTGCGCTGTGAGTTCCCCACGTCAGCGGGGATAAACCGTTGGTCACTCGTCAAAAGTCGAGACGGTCGAAGAGTTCCCCACGTCAGCGGGGATAAACCGNNNNNNNNNNATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGNNNNNNNNNNGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGCGGGGATAACCATTCAGGTATG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8867-9328 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQAZ01000184.1 Escherichia coli strain EELTKB244 NODE_1753_length_20575_cov_18.241117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8867 29 100.0 32 ............................. ATGCTGAATTTGAAGCGGACAAGGCGCGCTAT 8928 29 100.0 32 ............................. TTCGGAATCGAAGATGCTTTGGTGGAGGATGT 8989 29 93.1 38 ...........................NN NNNNNNNNCTGTCGCTAAAACTCGCCGCGTACAGCGTG 9056 29 100.0 32 ............................. TGGGCGCGTTACGCTTTATCTAATACAGTTGA 9117 29 100.0 32 ............................. ACAGGATAATCAAACATACTTACCTCACTACC 9178 29 100.0 32 ............................. TGCCATAACCACCCGCAGAACCACCCGCACCA 9239 29 100.0 32 ............................. TTATTATGCTGTGCGGCAACGCCTGTCTTTGT 9300 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 98.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : NNNNNNNNNGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGTCAGCGGGGATAAACCGGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATACCGGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATTACTACGCGCAATTGCCAGCGCCCTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //