Array 1 42152-40663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNEF010000005.1 Ligilactobacillus salivarius strain D6t1_180914_C6 NODE_5_length_43897_cov_43.5746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 42151 36 100.0 30 .................................... ACGAGAAATCAGATTTAACACCAACCGTTA 42085 36 100.0 30 .................................... TTGGACAGTGCGATAACGTTAGTTCCATCT 42019 36 100.0 30 .................................... AACGTATGGAGAGAACTACCGTTACTATAC 41953 36 100.0 30 .................................... AGAAATAGATCAAGCTATCAAACACTTATA 41887 36 100.0 30 .................................... GATTGTCCACTTGCTTGAACCTCAGCTACA 41821 36 100.0 30 .................................... TTACATGAATGCCGCACCTTTCTACAAGTA 41755 36 100.0 30 .................................... CAAAGGAGAAAGCGTCCTTGCAGGCGGTTC 41689 36 100.0 30 .................................... AACATGCCAACTCAAAGAAGTATGGATTTA 41623 36 100.0 30 .................................... CGTTACTTTAATCATGAACTCCAGCGTCCC 41557 36 100.0 30 .................................... AGGCGATCTTGCAATCACAAAAGGTTGGGA 41491 36 100.0 30 .................................... GATTGAGAGCTATTGTCAACGAAGTTATGC 41425 36 100.0 30 .................................... GTATTTACAATCTTATTTCCAACAACTGAT 41359 36 100.0 30 .................................... TAAAAGCCTTAAAAGGCGATCCCAGTGTAT 41293 36 100.0 30 .................................... ATAACATGCAGGAGAATATGCTCAACCGTT 41227 36 100.0 30 .................................... AAAAAGAGCGGAAAGTAATTCCACTCTCTA 41161 36 100.0 30 .................................... CAGTTAATTTTAGGATTTGCTGTTCAGCCT 41095 36 100.0 31 .................................... ATGGAAAGACAATTGTTCCATGGATAAGTGA 41028 36 100.0 30 .................................... GACAAGCCGTATATACTAAGAAATCTACAG 40962 36 100.0 30 .................................... TTTAGTGGTAACTCTAGTGGCGTAGCTATT 40896 36 100.0 30 .................................... ACAAGGAAATTAAGTTAGATAAGTAACACA 40830 36 100.0 30 .................................... TAAAGACGCTGGATACACACCAATGGTTTA 40764 36 100.0 30 .................................... ACAACTGGAGTTTGAGTACGTTTAGCTTGT 40698 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.2 30 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGATTTTGTATAAAATTGATATACCCTTACAAGCAGATTATGATAATGATTTAATAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAGTGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACT # Right flank : TAAAATACAAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGATTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGAAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAACTAGGGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //