Array 1 89179-92563 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIP01000012.1 Corynebacterium striatum strain 2425 scaffold9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89179 29 100.0 32 ............................. TAGAAAACCCCCACCAACCAGCAAAAACGCTA 89240 29 96.6 32 ............................G ACCTGGGCCGCTGTCGAGGCGACCGGCATGGA 89301 29 100.0 32 ............................. AAACCGGCCAATAAACACCGCGGGAAGTTCAC 89362 29 100.0 32 ............................. TCGCGGCCCCGACCTCTTCAATCACCTCACTG 89423 29 100.0 32 ............................. TCGGCCAAATCAGCGAGATACGCGGTTTCCGG 89484 29 96.6 32 ............................G GCGGCGTAGGTGTCTGTGTAGGTGGGGTTGAA 89545 29 100.0 32 ............................. CATATACGGCGTGGACGTGTCGGAACACCAGG 89606 29 100.0 32 ............................. ATCCATCGGGTCTTGGCCCCAGAACCCGCCAG 89667 29 100.0 32 ............................. CAAGAACTCACCGCTAACCTTCTACGACTCGG 89728 29 100.0 32 ............................. CAGCCTTTTTGGCGCGGTCGATAGTCCACGTG 89789 29 100.0 32 ............................. ACTACCCCACATAACGGGCATACAACCAGCCA 89850 29 96.6 32 ............................G AAGCGGGTGCTGCTGCCCAGTCAAAGCACCGA 89911 29 100.0 32 ............................. CATGCGGCGTCACCCGAGGAAAAGCTGGGTCA 89972 29 100.0 32 ............................. CCGGCCATTCGTTCGCGGCCCTTGGACTTCCA 90033 29 96.6 32 ............................T CAAACCCCAGACCACCAAAAGCTAATCATGAC 90094 29 100.0 32 ............................. TGAAGACCAGGTGCACCCTATGGGTGTTCCTG 90155 29 96.6 32 ............................T GACGACCCGGATAAGGCTGGCGATAAGCAGAC 90216 29 100.0 32 ............................. ATTGTGCGGGTGAAAGCGACAATGGCGGATGC 90277 29 96.6 32 ............................G ATCGACCAGGGCAAGTACTTCTCCTTCGGTGT 90338 29 100.0 32 ............................. CAACTCATGATTTAGGCCTCCCCATCGAGGTT 90399 29 96.6 32 ............................G TACTGGCGGGCTTGCTTGCCTTTGTCGGTGCG 90460 29 96.6 32 ............................G ATGCCGGCCATCACGCTATCCGGTGAGCTTCA 90521 29 96.6 32 ............................G AAGGACCGGCAAACACTCGAGGAGCAGATGGG 90582 29 100.0 32 ............................. AGATCGCTTTGAGTTTCAGCCAAAGCGTAAGA 90643 29 100.0 32 ............................. CCAGCGACATGCCGTATCGGCGTTTGGAGGTG 90704 29 100.0 32 ............................. AGCATCCACGAATTGCGCAGCGCCACGAGTAC 90765 29 100.0 32 ............................. TTCGTCAACGCCTACGCGCAGCAGGGCAAAGG 90826 29 100.0 32 ............................. ACCGGCACCGACAAAGCAACCATCGTGCGCCG 90887 29 96.6 32 ............................G TAGGATTCGTAGCCCTCCTGCACACCATCGGT 90948 29 100.0 32 ............................. ATGGTGGAGGTGCGAGGGAATAACCCTCAAGC 91009 29 100.0 32 ............................. GCGCCTCGGGGTCGGAGCGGCGCATGATCTCG 91070 29 100.0 32 ............................. AACTCGTCCAGAGCACCCGGCATATCCTTCGC 91131 29 100.0 32 ............................. GTTTGCGGCACGCCATCATTATCGGGGTCTTC 91192 29 100.0 32 ............................. AGATCGTCGCGCAACTTCCAATGCTTATACGC 91253 29 96.6 32 ............................T GTGCCGCAGCCTTAGCAACTGCCGGAGCCTGA 91314 29 100.0 32 ............................. GCCCCACTGTTGCAGGGTTTCGGAATGCCCGG 91375 29 100.0 32 ............................. TTCGCCTTAGCAGGAATCGACGCCCCCGACGA 91436 29 96.6 33 ............................A TACGACGTCGTGAATGAGTTACTCCCTGGGTGC 91498 29 100.0 32 ............................. TTGCTGGTCAGTCGATGTTCACGTTCAAGGAG 91559 29 100.0 32 ............................. AAGAAAGGCACCCGCGACGGCGGCAACCGTCC 91620 29 100.0 32 ............................. ACCGTATTCCACACGTCAGCCGCATTAAGTGC 91681 29 96.6 32 ............................T AAATCTGATTCGGCAGATTAAAACACTCGTCA 91742 29 100.0 32 ............................. CAATTGCCGTACCTTACGGCGCGAGGACGTCA 91803 29 100.0 32 ............................. ACCTCCGACGAACGAGCAGACTCCGCATCCGA 91864 29 100.0 32 ............................. AGCTAGCCCTACTCATCGGAGTGCACACCGCA 91925 29 100.0 32 ............................. GGCATTGAATCAGACACGCCGGACACGGGGGT 91986 29 100.0 32 ............................. GCGCCTGTCCTTATCGACCCCAACCAATAACC 92047 29 100.0 32 ............................. ACGTCCGCGCCCACCGCGACCACCCAGATGAA 92108 29 100.0 32 ............................. CATTTGCCGCGGACTTCACCGCACCAGTGGAC 92169 29 100.0 32 ............................. ATTTTAGCCACGGTGCCGATGTTGTACTTTCC 92230 29 100.0 32 ............................. CACTGTGTGTATCGCTCCGACACTTCTAGGAA 92291 29 100.0 32 ............................. CGCTACGACGAGCAAAATAAGCAGTGGGTTAA 92352 29 100.0 32 ............................. GGAAGCACACAACCACACATCTACCTCGGCGA 92413 29 100.0 32 ............................. TCCCCCGACTACGAGGGCAGCCTGCAAGACTT 92474 29 100.0 32 ............................. CGAATCTTGGACATCCTAGGAGACCACGATGG 92535 29 82.8 0 ........................TTAGG | ========== ====== ====== ====== ============================= ================================= ================== 56 29 98.9 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : GACCACGGATTTAGTAACACCGTGGTGAGTATCCAGTAACGCCCGGGTGAGTATCGAGTAACACCCGGGCGTTGACTATGCGCCGCTACTGCGTATTGGCTTCGAGGCGCATGTTCGGACCTTCCAGCGTGATGATCTCAGCGCCNGGTGAGTATCGAGTAACACCCGGGCGTTGACTATGCGCCGCTACTGCGTATTGGCTTCGAGGCGCATGTTCGGACCTTCCAGCGTGATGATCTCAGCGCCAACGACAAGCCGATTCAGTATCGACTCGGCGATGACAGCATCCGGGATGGACTTGTACCACTCATCGGGCGTGAATTGGGAGGTGACAATGGTTGATCCCCGGTGTTCGCGCTCAGCAAGAATGTTGAGCAGCTGGTGTGCTGTGGCAGCATCAATCGGCGTTGTTAAGAAGTCATCAAGCACGAGTACATCCGCCAGGTGGAGATCTTGAAGAAACTCCATGCGTGCTGTGTCATCATGGCGCAGCACCATCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85-2918 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIP01000013.1 Corynebacterium striatum strain 2425 scaffold17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85 28 82.8 32 A.A.-.......C..A............. GCTGCACAATCGCCTCATACCCCATCGAATTA C [99] 146 29 100.0 32 ............................. CGCAACCCATAACGATTACGACACTGTGACGA 207 29 100.0 32 ............................. GCCTCGTCGGCTGAGATGACGGGCATTTCTCA 268 29 96.6 32 ............................G TCTTGGAAGTACTTTTGTGTGAGTGTCATAGG 329 29 100.0 32 ............................. CTAACCCTTGTCGATGCCGTGGCAAGTATTCG 390 29 100.0 32 ............................. ATCATGGGTGTGCGAACGACGCACCAACCCCA 451 29 100.0 32 ............................. TATGACCGTGCCCTCGCGGTACTCGAAGCAGC 512 29 100.0 32 ............................. CCTTTTCGGATCGGATGCTATGCGCCTGGCTG 573 29 100.0 32 ............................. TCCGCCCCCTTGCCCTGGCACTACTCGCACAC 634 29 100.0 32 ............................. ACCTCAGCTCGGAGCTCGTCGATGGCCTATTC 695 29 100.0 32 ............................. ACTACCCAGGGTGGACGAGACACCCGTGGTAT 756 29 96.6 32 ...........A................. TTGCTAGTGTCTGGCTCGAAGTACTTATTCGA 817 29 100.0 32 ............................. CCGGGTTGCATTGTCTACCGGGGTGGTATATA 878 29 100.0 32 ............................. AGTTTCACTTGGGTTGCGGGGATGACTCCATC 939 29 100.0 32 ............................. CAGTACACAGAGTGGGGGACAGCGCGTGAACC 1000 29 100.0 32 ............................. AGCGAATGGTTTGCGTGCCTGGCTGGCTTTCG 1061 29 100.0 32 ............................. CAGCACGGGGCTGGCTAGGGGTGTTAGCCGCT 1122 29 96.6 32 ............................G CCGACGAGGACACCAACGAGGAAACCGAATAC 1183 29 100.0 32 ............................. TTTGAGGTGGTCCCACTTCTCTACCTCGTTGG 1244 29 100.0 32 ............................. AAGTTTTCCTGCGGTAGCAGGTCGCGGATTGC 1305 29 100.0 32 ............................. TAGCAGGCAAGCAGTTCTTCGACACCGACAAG 1366 29 100.0 32 ............................. CGTCCATGTGTTCGGATGCCCTAGCGCGTCCA 1427 29 96.6 32 ............................G GAAGGCGTGGAGGTCGCGGCCCATGACGGCTT 1488 29 100.0 32 ............................. ACCATGAATGCCGTGTCAGGTGCTACGGCATC 1549 29 100.0 32 ............................. ACCAGACAGGGATTCAAAAACACCCTTGAGCT 1610 29 100.0 32 ............................. TCTGGGCCGACAAATAACACCCCCCAAAAAAC 1671 29 100.0 32 ............................. AACTACGCAAACCCACCAGCGACACCAATTAA 1732 29 100.0 32 ............................. GGCGAAACCCCCACCGGGGATAATCCCGGCGG 1793 29 96.6 32 ............................G TAGAAATGACTACCTAAGCAATAAAGAGATGG 1854 29 100.0 32 ............................. GGCCACCTATCGCCCCGGCGTGTAGGTGAACT 1915 29 100.0 32 ............................. AGGGCGGCGAGGGATTCGAAAAGCTCAAGGGG 1976 29 89.7 31 ..........................TAG GAGGCTCACATGATCGATACCCGTCCGGTGG 2036 29 96.6 32 ............................T GTCACACAAGGGTGTCACAGCGCCCCGACCCG 2097 29 96.6 32 ............................G TAATGGGCCTGGGAATCGCTTTATCGCTCACC 2158 29 96.6 32 ............................G TTCTGGAAGTGGTCATTAAACAGTTCCATTAC 2219 29 100.0 32 ............................. CTTACTGCGCTTCTCCCCCTCCCTGGTCTCCC 2280 29 100.0 32 ............................. TCTACGGGCCACAACCAAATCTCATAGCAGCC 2341 29 96.6 32 ............................G CTTTATGTAGGTAATAAAATCCCTAAGCAGGT 2402 29 100.0 32 ............................. CAGGCACCGATCACTCCATGATGTACCGCGAG 2463 29 100.0 32 ............................. GCGGCACCGACACCGCCCACGGCGGCACCCAA 2524 29 96.6 32 ............................T TTTGCTGCCATCAGCCACCGCCTTATCCACGT 2585 29 100.0 32 ............................. GCCATCAACCCATGCAGACCCCAGCACACGTG 2646 29 100.0 32 ............................. CCTTAAGGACTTCGAGAACGCGCCAGAGGGCA 2707 29 100.0 32 ............................. GCACAATGTCGCTCACCTCGCCTACCATGACG 2768 29 100.0 32 ............................. ATACACCGCCCTAGTGGACTTCCTCACCAATC 2829 29 100.0 32 ............................. CATAGCAGTCCCTCATTTCAATATCGGCCAGC 2890 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 47 29 98.6 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTCACGCGGTCAGAAGAATCTTCTCCCAAAGCGTTACTCGATACTCACCATTGCGTTATCCGATAGTCACCACGGTGTTACTAGA # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTTAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACGTTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //