Array 1 176740-174011 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIK01000006.1 Pasteurella multocida subsp. septica strain CIRMBP-0922 NODE_6_length_192278_cov_360.774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176739 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 176679 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 176619 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 176559 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 176499 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 176439 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 176379 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 176319 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 176259 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 176199 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 176139 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 176079 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 176019 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 175959 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 175899 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 175839 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 175779 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 175719 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 175659 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 175599 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 175539 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 175479 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 175418 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 175358 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 175298 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 175238 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 175178 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 175118 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 175058 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 174998 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 174938 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 174878 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 174818 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 174758 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 174698 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 174638 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 174578 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 174518 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 174458 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 174398 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 174338 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 174278 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 174218 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 174158 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 174098 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 174038 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 112567-112267 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIK01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0922 NODE_3_length_210110_cov_342.458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112566 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 112500 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 112434 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112368 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 112302 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 91101-89524 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIK01000004.1 Pasteurella multocida subsp. septica strain CIRMBP-0922 NODE_4_length_202629_cov_361.922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91100 28 100.0 32 ............................ ATTAGAAGTCGATCAATCAATGCTATTCAATG 91040 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 90980 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 90920 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 90860 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 90800 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 90740 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 90680 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 90620 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 90560 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 90500 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 90440 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 90380 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 90320 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 90260 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 90200 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 90140 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 90080 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 90020 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 89960 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 89900 28 96.4 14 ............G............... TCTTTGATTAATTC Deletion [89859] 89858 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89842] Deletion [89817] 89812 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89796] Deletion [89771] 89766 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89750] Deletion [89725] 89720 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [89704] Deletion [89679] 89674 28 78.6 32 ....TGA.TTT................. GACTGGAGTGAGAATGTCGTCGAAAACTTACA GCTT [89658] 89610 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 89550 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 28 28 95.4 29 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //