Array 1 194847-195897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZMZ01000040.1 Escherichia coli strain HT2012DB03 NODE_77_length_330871_cov_49.827160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 194847 28 100.0 32 ............................ TGGCAAAAGGCCGTCCGGCGCTGCCTCAGAAG 194907 28 100.0 32 ............................ ACCGGGGCTATATTCACCGAACGCCAGCAAAA 194967 28 100.0 32 ............................ GGAAATCTAAAAAAATTTATTGGCGATACAAG 195027 28 100.0 32 ............................ CGAAGCCGTTGCGGATCTTTAACAGCGCCACG 195087 28 100.0 32 ............................ GCTGTAAATTGGCTGACCGTCGCAAAATGAGG 195147 28 100.0 32 ............................ GCGCGCTGAATTGCCAGAATCGTGGGCGCACA 195207 28 100.0 32 ............................ AGTTTTTTACCCCACACCTCCATTTTCACATT 195267 28 100.0 33 ............................ AGGTCGCAACAAAATCCGGGTCAAACGATCCGT 195328 28 100.0 32 ............................ GTGAATCACGGCGCTTATTGCTGGCTGAAATG 195388 28 100.0 32 ............................ AGCTCAACGGTACGCGCCTGCTCGTCAATCGC 195448 28 100.0 32 ............................ AATACGCCCGACTTTTTGTGGCATTTCTGCTG 195508 28 100.0 32 ............................ TCGCCGAGATAACTGCGCACCTCGCGATCTGC 195568 28 100.0 32 ............................ GGCGAGCGGTCGGGGATCCCCTTATATAATTT 195628 28 100.0 32 ............................ GGCGCGCCCACCTCTTCCTCCAGCCCCGGGGC 195688 28 100.0 32 ............................ GGTACGCTCGGAACACAGCGGGCAGCACTAAC 195748 28 100.0 32 ............................ AACTGGCGCGACGTCCGGGGCAAACCTGGTGG 195808 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 195868 28 85.7 0 ....................A...C.CT | T,C [195888,195892] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 204961-205648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZMZ01000040.1 Escherichia coli strain HT2012DB03 NODE_77_length_330871_cov_49.827160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204961 28 100.0 32 ............................ GCACATTCCCGGCCTCTTGTTTCCCTGGTGGC 205021 28 100.0 32 ............................ GAAAACACCGGCGAGATCGTATTTTTTGCCGC 205081 28 100.0 32 ............................ AGCAAACCACGCTCGGTAGTGAACTACGCATC 205141 28 100.0 32 ............................ AGGAAGGTGGTAAGAAGCAGATTGCGCTGACC 205201 28 100.0 32 ............................ GTTCAATTATCAAATATCACCCGCGATATGGT 205261 28 100.0 32 ............................ ACATTTAAACTAACAATTGGTGAGCCTGATAT 205321 28 100.0 32 ............................ TTTCTGATGTACGGGCAGCCAGCGCGGATCCA 205381 28 100.0 32 ............................ GGTGCGAGCTCCTGCTCTTGTGACTGTGAAAC 205441 28 100.0 33 ............................ CCAGCTGGATGAACAAAGGCGAACCGCAAAAGC 205502 28 100.0 32 ............................ ACGAATGCGCTTACATCCTGGCAAAAGGGCGT 205562 28 100.0 31 ............................ AAAACATGGCGCTGGACCAGACCCGCAAGGT 205621 27 92.9 0 .......................-C... | T [205641] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGTGTAGGCCATGTCTGGTGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATNNNNNNNNNNTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGATTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //