Array 1 1-268 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIS01000080.1 Escherichia coli strain LVNMSB170 NODE_743_length_238_cov_63.306725, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 61 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 121 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 181 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 241 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 160776-159817 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIS01000058.1 Escherichia coli strain LVNMSB170 NODE_342_length_520847_cov_52.391968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 160775 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 160715 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 160655 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 160595 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 160535 28 100.0 39 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATNNNNNNNN 160468 28 92.9 32 NN.......................... AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 160408 28 100.0 38 ............................ AGCAAAAACCGGATATAGACAATCTCACTANNNNNNNN 160342 28 92.9 39 NN.......................... AGTTCGGCATGAGCAGCTCCTCTGTAGTCNNNNNNNNNN 160275 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 160215 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 160155 28 100.0 39 ............................ GCAAACGGAATTAGCAGCAGCATGATCAANNNNNNNNNN 160088 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 160028 28 100.0 36 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGNNNNNNNNN 159964 28 96.4 32 N........................... CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 159904 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 159844 27 92.9 0 .......................C-... | T [159825] ========== ====== ====== ====== ============================ ======================================= ================== 16 28 98.4 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTATTCCCTGGTTTTGATGCTTTGCAATTTTTAACAGGCCTGACCATGCGGTTGGGCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGNNNNNNNNNNTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 170176-169776 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIS01000058.1 Escherichia coli strain LVNMSB170 NODE_342_length_520847_cov_52.391968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 170175 28 96.4 32 N........................... CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 170115 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 170055 28 100.0 33 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC 169994 28 100.0 41 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGNNNNNNNNNNA 169925 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 169865 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 169805 28 85.7 0 ....................T...C.CT | C,A [169779,169782] ========== ====== ====== ====== ============================ ========================================= ================== 7 28 97.4 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTNNNNNNNNN # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //