Array 1 265417-272415 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017703.1 Aeribacillus pallidus strain KCTC3564 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 265417 32 100.0 37 ................................ ACTCCTTGTCATTATGGAGTCGGTGTTTCTGTACCGA 265486 32 100.0 34 ................................ ATCACGGTCTAATTTTTTGTTTGCATTATAAAGA 265552 32 100.0 33 ................................ CCGAATGATGATGAACAGTGAACCAATCATTAT 265617 32 100.0 35 ................................ TCATTTCATGCTGCAGATGTAAATTATACCGGTAT 265684 32 100.0 35 ................................ TGATGCCAAACCGTTCATATGCCTCCTCCAATCGT 265751 32 100.0 33 ................................ AGTAGTCCGCGAGGAACGTGAAAAGCCATTGCA 265816 32 100.0 34 ................................ TACTCCAGTTGCTGTGTTTAGCATGCCGCTTATT 265882 32 100.0 34 ................................ TGCAACTTTATTTTCTTCCTTAGGCTTCTCATTT 265948 32 100.0 35 ................................ CCGCAACAATCAACTGTTGGTTAAGATTGTTTAAA 266015 32 100.0 33 ................................ TAGTGTGTCCGCGTCCTCGTTGCTGTTAAAGAC 266080 32 100.0 34 ................................ CTTCTTTATGTCCGTTTTATAAACCCCCGCTAAT 266146 32 100.0 34 ................................ GGCTCTAATCCGTATTTTCATTTTGGCCAAAAAA 266212 32 100.0 35 ................................ TGGCAATCCAATGTTTAGTGATGATGGCAACTATC 266279 32 100.0 34 ................................ AGCGCTCTCTTGTGTGTCCGTTTTAACGTCTTTT 266345 32 100.0 35 ................................ GATATAAGTGGTTCCATCGATAGTGACTTTGTTGC 266412 32 100.0 35 ................................ CAAGAACACGCGTGTTAGTGAACCGCACAACTGAC 266479 32 100.0 34 ................................ TCCGTTGATCAGTATGTCTTTTGTAACGTGGTCA 266545 32 100.0 33 ................................ TTCACGCTGAACGGGCACTTGTGTTTCAACGTC 266610 32 100.0 34 ................................ CCTGCATACGGTAAACCATTGTTGATTCATCAGC 266676 32 100.0 34 ................................ ATCAACAGAACCGCCAAACTTTCCTAGCGGCGCA 266742 32 100.0 35 ................................ TGCAGCATGACCCAGAAAAGGAATTTTGTAGCTGT 266809 32 100.0 34 ................................ ATGAATATCAAGGACAAGCTATCTATAATTTAGA 266875 32 100.0 34 ................................ ATCGACGACTTATTTAAGCCGGTGAAAGGGAAGC 266941 32 100.0 33 ................................ ATCAAAAACCGGCTGTAAAGCAACTAGAACGTT 267006 32 100.0 34 ................................ AAGTATGCGGCTGGTCCAGCGGCTCAACTTGGAT 267072 32 100.0 34 ................................ TTAACTAACAATTCCTCAATTGCCCTGTTATACC 267138 32 100.0 36 ................................ AACATCACCTTTATTTTCAAATGTGATTTTCGTACC 267206 32 100.0 34 ................................ TATCATCGAGCGATCGCCATACCCAATGCTTTCC 267272 32 100.0 34 ................................ CTTTCTGGCTCTACAATTGGCAGAAATTTATTAA 267338 32 100.0 34 ................................ TTTCAGACTTGAAAGAGCGGTTGCGTATCACGTG 267404 32 100.0 36 ................................ TAAGATTTCAAATGTTTTCAACAGCATTAAGTCAAC 267472 32 100.0 36 ................................ AACTTCGCTGTCTAAAAAGTCGATGCTCAATACATC 267540 32 100.0 34 ................................ ACATGGGATGATATAGAGGCGGCATACATGCAAA 267606 32 100.0 34 ................................ ACTAGTCTTTAGAGCATCTACTTTAGCTTGAGAT 267672 32 100.0 35 ................................ ATCACTGTATTCGATTTTTCGAGAAGAGCCCACAC 267739 32 100.0 35 ................................ TCTCATTTCTTTTTCGCTCCTAAGATTTCTTTGAT 267806 32 100.0 34 ................................ TGGCGTGCAACCCAAGAAAACTTCTTGATATAGC 267872 32 100.0 34 ................................ AAATCATTTAGCACCTGAAAGGTGGTGAGATAGT 267938 32 100.0 33 ................................ TTGCAATCCTTTACTTGTGACAATTTGAACATC 268003 32 100.0 35 ................................ TGCACTGGTATATACTGAATCCTTCGCCATATCGA 268070 32 100.0 35 ................................ AACTTATACGACGTTGGTTTTGCTCTCGGTTATAC 268137 32 100.0 35 ................................ AGTTAAAACAGTGCGTACATAACGATCTAGCCAAA 268204 32 100.0 34 ................................ CATCTACCGTTTTTACTTTTTTTCTATAGTTATC 268270 32 100.0 37 ................................ CCGTAATCCAAAACTGCGTCAAGAATGCTCATCTCTC 268339 32 100.0 34 ................................ AAATCAATCCGAATATCATCAACCCCTTTCCGGA 268405 32 100.0 35 ................................ AATTTGTTTTTGTTGATTGACCGAAAAGAGGGCGG 268472 32 100.0 34 ................................ TTTATTGAAAGCCTTAAAGGTTACTTTTACTTCC 268538 32 100.0 35 ................................ ATAGAGAAAGGGAAATTGGCATTCAAAGAAATGTC 268605 32 100.0 35 ................................ TATAAGTCAAGAGAATGGAGAGAACTAAGAAAGAA 268672 32 100.0 35 ................................ TCAAGATTTGAGGCTTGGGTTGATCTATTGTTGAT 268739 32 100.0 35 ................................ ATTACGTGCGATAAACATCACAATTTGAGGTAGAA 268806 32 100.0 33 ................................ ACATGGGAACAGATCGAGGCGGCATATCTCCAA 268871 32 100.0 35 ................................ CGTATTTTCCTCGCACAATATCTCCTGCATAAATT 268938 32 100.0 34 ................................ TTTTCCATTTGTTCTGCAAACCACTGCACTTGCT 269004 32 100.0 34 ................................ TTTTACTACCAGCAGTTTTATTAACACCATCTAC 269070 32 100.0 34 ................................ ATTATTTTGAGGATAGAGGTGTACAAAAATATTA 269136 32 100.0 35 ................................ ACTTGTATGGTTTCTGTTTCCATAGTCACAAAGTA 269203 32 100.0 33 ................................ TTCCATTTGCAAAAAGGTGAAAATCAGTTTGTA 269268 32 100.0 35 ................................ ACTTGTATGGTTTCTGTTTCCATAGTCACAAAGTA 269335 32 100.0 35 ................................ TTCTCTTCTTTGGATAAAGCTTTAAAAGAATTTAA 269402 32 100.0 34 ................................ ATTGTTTAACTAGTCTTTTGAATATTTCCGAACA 269468 32 100.0 34 ................................ ATTAAACGGTATAGGCAGTAGAACACAACAAATC 269534 32 100.0 35 ................................ TATTTCTTTAATCAGCTTTGTCTTACAATTAGGAC 269601 32 100.0 35 ................................ TTAACTAACAATTCCTCAATTGCCCTGTTATACCC 269668 32 100.0 35 ................................ CCGAATGATCCGAAAATAGTTTTCGATTTGTTGAC 269735 32 100.0 34 ................................ TCCCCAAGGTGCTTTTTTTATTTGTATGATGAAA 269801 32 100.0 35 ................................ TGTTCATACTTCTCGAACCAATGCGGCCCAAAATC 269868 32 100.0 34 ................................ CGGAAATGTAGTAGCAGGATGGGGAATGATTGCA 269934 32 100.0 34 ................................ TGTTTTTCAGATCATTGATGTTAAAGACCCAATC 270000 32 100.0 34 ................................ ATCCACTACCTCATCACAAAAACCTAACGCTTTA 270066 32 100.0 35 ................................ TATCTCTTATTGAAACCCCCAATTGATCAAGTTGC 270133 32 100.0 37 ................................ AATATGCTGATATACGCTATCTGTCCGTCTTCCACAA 270202 32 100.0 34 ................................ ATTATTGTCTTGATAAAACATGTGGTTGGGAAGA 270268 32 100.0 34 ................................ AATCTCTCCTACTCTCTCATATGCTAATGCCAAT 270334 32 100.0 33 ................................ TTTTAGATCAATAAACTTTTGTTTGTCATAATT 270399 32 100.0 35 ................................ TCCGTTGACGGATTTTCCGTTGACGGATTTTCCGT 270466 32 100.0 35 ................................ ATCGACAATTGTCGCGCTGTTACAGATAGCTTAAC 270533 32 100.0 34 ................................ CGAACTGTAATTTGTTTTCCGCTTGCCACAATTG 270599 32 100.0 35 ................................ ATCGTGCTTGGACATTCGCATACGGCAATGCTGCA 270666 32 100.0 34 ................................ CGATTCTAAGTTAAAACTAGGATCGATGTCTGAC 270732 32 100.0 34 ................................ TGTCACCCCTTTACATTGCCACGTCGCAATAAGT 270798 32 100.0 33 ................................ TTATACTGGCCACCATCATCCCTCCGATTCAAA 270863 32 100.0 34 ................................ ATCTCAACATTTTCTATTTTTCCGGCTAGTTCTG 270929 32 100.0 35 ................................ AACTTATACGACGTTGGTTTTGCTCTCGGTTATAC 270996 32 100.0 35 ................................ AAGATTTTGCTGCAAATATTGATCGTTTGCGTAAA 271063 32 100.0 34 ................................ ATAGATACCACATTGTGATGTCTTGCTGTTAGTC 271129 32 100.0 34 ................................ TATACCTGACTGTTATCGATGGATGGCTGCTGGG 271195 32 100.0 34 ................................ CAATCTCGACACATACGTTGACGGTGCGTTTAAA 271261 32 100.0 33 ................................ AAGATCAACAATTTTCCCAGGTTCTGCCTCTGC 271326 32 100.0 35 ................................ AGACGTCATATCGGAGACGAAAAAGCAAGAAGCGA 271393 32 100.0 35 ................................ AACCGTACAAGACTTGCAAAATGAGGTTTCTAATA 271460 32 100.0 34 ................................ CTACTGCTGCTGTTCCAATCTTCGCATTCGTAAT 271526 32 100.0 34 ................................ CGAAATGCTGTCTAATCTCGGTTGCACAATGGCC 271592 32 100.0 34 ................................ AATTTAGATATGAGCGACTTTGACGCCATTTGGA 271658 32 100.0 35 ................................ AATCAGTCTCTGTTCCACAAGGTAGACTTATCGCT 271725 32 100.0 34 ................................ AATAATTGTAAAACGATCGGTATAACAAGCTGTA 271791 32 100.0 34 ................................ AGAGACACAGCAAAAGAATTGCACATTAAGCAAA 271857 32 100.0 34 ................................ AAGTATGCGGCTGGTCCAGCGGCTCAACTTGGAT 271923 32 100.0 33 ................................ GTGCATATCGAATATTTTTCCATCTCTTTTAAC 271988 32 100.0 36 ................................ GTAAACTGTTTATCCGTATCTGTATATGTGCGGTAC 272056 32 100.0 34 ................................ AGCTTCGGCTATAATTTCGTTTTTCGGAATTGAG 272122 32 96.9 33 A............................... ATGAGTAGAATCTATTGTAATTTGCAAAAAATC 272187 32 100.0 34 ................................ AGAGACACAGCAAAAGAATTGCACATTAAGCAAA 272253 32 100.0 34 ................................ AAGTATGCGGCTGGTCCAGCGGCTCAACTTGGAT 272319 32 100.0 33 ................................ GTGCATATCGAATATTTTTCCATCTCTTTTAAC 272384 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 106 32 100.0 34 GTCGCATCCTTTATGGATGCGTGGATTGAAAT # Left flank : TTGGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAAATTTTGTTAGTTTTAATAACTTATGATGTTAGTACTGTAAGCAGTGCAGGACAAAAAAGATTAAGGAAAGTGTCAAAAGTATGCCAAAATTATGGCCAACGAGTCCAAAATTCAGTTTTTGAATGTAACGTCGATGCAGCCCAATTTACAGCTTTAAAATTAGAACTTACCAATATTATTGATGAAAATAAAGATAGTCTCAGGTTCTATCAACTAGGAAACAATTATAAGTCTAGAGTAGAGCATATAGGTGTGAAAGCATCACTTGATTTAGAGGATCCTATAATTTTTTAGTGCGAATGTATAGTGAGCTTGAAATTCTTGATGCATTCGCACCTGATTTTTTTGAAATTATTGCCATATTTTATTTTTTTTTGAAAAAAGTTCTTTATTTTTATAAAGAAAATGGTGGTTTTTTGTCAAAATTACATCAATTTAAGTAATTTTGAGAAAAAATCGCT # Right flank : TCATCATGATTTCTGTGTCTTGTTTCATTTGCTGCGTCGCATCCTTTATGTTTTTTAATGAAAATATTTTTGTAAAGGTTTAAAATGAAACATATACTAGTGCTTTTGTCATAATGCAAGGGAAATTAGCATTGCATGAATCAGAGGCTGGTTTAGGGGGAGTTTCCAATGGCTTGAAAAAGCGGTGAGACGATAATGAATATAAGCTTCTAAAGGAAAAATATTTTATCTATTTGGTTAGCATTCGGCTTGCTTTTTATTCGTGATGCCATTCGGAAAGATTTTATATTGCATTTTTCCCGAAATGGTTGTTTTTATATTTCAGTCGGTGCTCAAAATAGAAAAATTTTTGGTTATGCGGCAACTTAAGTGCTTTCTGGTTTACCTGTTTTCTTTTTAGTATTTTCCGGTTCTTTTGCAACAGGTATATTCAAATAGCTTCCTACTTTGCCGCTTTCATTTTAGTGATTTCATACGTTCTTTGCCGATGTGTAACCTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 546267-546757 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017703.1 Aeribacillus pallidus strain KCTC3564 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 546267 30 100.0 36 .............................. GCATACAAGGGAAGTTTAGTTTAACTCCGCCGCAAG 546333 30 100.0 34 .............................. AAATATTCCATACTCTTTCTTTTGCATCTTCTTC 546397 30 100.0 35 .............................. TCTGGATACACACCATCAACAACAGCTCCAGCTAA 546462 30 100.0 36 .............................. AAGATGGCAACTTGCTGCCTGATGATGGCAAGCCAA 546528 30 100.0 35 .............................. TGGGCTGGGATGCTTGCAGCTTGGAACAGTATTTG 546593 30 100.0 35 .............................. TCTGGATACACACCATCAACAACAGCTCCAGCTAA 546658 30 100.0 40 .............................. CAATCTTTCCTAATGACCCATTGAAAACACTCAGGTCTCC 546728 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 8 30 100.0 36 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : GTTAATTTTAGCTTTAGAAAACAAGCATAATGTTGAGGTTCATAAGTTGAATGGACAACATGGATTCAGTGACCCATTCTCTTTAAAATATAACGAAGCATCAGCAAAAAAAGCTTTTTACCAGATGTTGTTTTTTCTTTTGGAAACATTTAGACGTATTAACTCCGATGGAAAATCGGACTAACTTCTTTATCTGTGGTGAAGCTCCTTCATGATTGACTAATTGGCAGGCTAGCTGAAGAAGGCAAGGTTTAGTTTCAAAACAATGACGATATTTTTTCTGGTATGAATTTTGAAACAAACGCAGTACAGCACATCACCCAAGTGTGAAAAAAGTCGTCGACCTCCAATCGTGTAAAAATCCCTGGAGATCGACGACAGCTGTTTTTTGAAGGAAACAGCAGAATAATGGGCCATTGCTAAATTTTTCTATGTTCGTTATAATTAAAACCAACATCCGCCATTATTTAGAAAACATACTAACATCAACGTTTTTTGGG # Right flank : CGCCATATCTTGAAGCTTCAGTGCTCGCTTTTTGCGGTTTTTAAGTACAAGGAATCAAAACTGATCGAGCATTAGTTCACTTGAAAGCGGAAGCAGCTGCACCCGATCTGTGAGCAATAGTTTCTCAATTATAAAGATCAACGAATAAACATATGCAGTGCCATTTATTTTTGCCTCTTGCCTCTGTTGCATCACTTTTCTACCCTATTGATCTCTCAATGAATTTAGACATTTGATTTTATAATCGTATCTTATAAAAGGGAGAGGTCTTAAGACAGCCGATATCAATTCCTGTTTGCATACCGTGCGGGCGTTTTTCAACTCAATTGCAAATTCCTTGTAAACACCCTTTCCTTTCATACACACATAAAAATAGCTTTCTTAAATAATAATCCCTCTCAACTTGATATACGTTTACTTCACGAAAATCAATCATATTCTTTAGCAGACAATAAATTTGGCGAACGATGAATGGATAAGAGAAAAAGTTATTCAGAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 3113238-3112469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017703.1 Aeribacillus pallidus strain KCTC3564 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3113237 30 100.0 37 .............................. ATGAAAATGAGGAGGGTCTTCCTTGCAGGGGTACATC 3113170 30 100.0 35 .............................. TACGATAGGTTTCGGTCAAGTTCCGCAAATTGTCG 3113105 30 100.0 38 .............................. AGTTTGTAACATATAAAACGAACCTCCAAACGTCAACC 3113037 30 100.0 38 .............................. TGTTGATGAAGGGAAAAGCGCAAAAGACTTGGATCGCC 3112969 30 100.0 38 .............................. TGTTGATGAAGGGAAAAGCGCAAAAGACTTGGATCGCC 3112901 30 100.0 36 .............................. ATAATGAACGGCGACTTTCCGTAGGCGTGAAATGTG 3112835 30 100.0 39 .............................. ATCTTTTTTGATACCTTTACTTTATCTAGTCCTCGCCAT 3112766 30 100.0 37 .............................. GAGAATGGCAAGAAATTGATGCGAGGCGATTCACAAA 3112699 30 100.0 36 .............................. AGCTGTTGTAGTTGTTGTAGCTGGATCAACTGCACC 3112633 30 100.0 36 .............................. CTCGAAAAATGGAGCCAATATCAAGGGGATCTTGCA 3112567 30 100.0 39 .............................. TACGTCTGAAATGTAGGATCTATGGTCTGAAAAAGACCT 3112498 30 90.0 0 ............C....A........C... | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 99.2 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : AAAATCGTGTGTAACTGGACCGTTGCAGACTAGAAAATTGCGCCACCAATTAGTCCATATGATTGTGTCAAAAGGGAAATAGAAAAGAGCCACATTGCTTCCCCTTCCTTTGTAGAATTTACAATGGACAAACATAAGGAGGAATGCAACAATGGCTTTACCGCAAATGATGTAGTGTCAAATAATCCACTTATCTATTTTCTAATTCAGGATCTTTAATTCTTTACAACTCTTCTCGATTTCTGTCCGAATAAAAAGTCCTAAAAACAAGCCTTTGATCAGTAAGAATACTGGAATCATTGACATTCTTCTTTATAAAAATAATGAAAATTTGTCGTCGACCTCTAATCGTGCAAAAATCCCGGGGGATCGACGACTCTTTTAAAATTCAATTGAGCCCACGCAAATCAAAGGATTGATAAAATTTTACTCCTTCGTTAAAATGAAAATAACCAATTAACCATTTTAAACCAAATACTTATCTAACAATAATTTGTGGG # Right flank : ACCAAACTAAAGGCCTTTACGTTTGATGCCTACCAATTGCTCCCATTATAGACCCCGCTGTTAAAAATAAGGAATAAAAAACTTTGCGGCGGTCATAATGATACATTTGAGATATAAAAATATTGTGCCGATATGATGTTCAAAACAGTAAAATTGATGCAGGTATTTGCTTATGAAATATGATCAAGGTGTTTCCTTGTCTTCTAGATACAGGCATGGCATCGCGATCACCATAAATATAGATGTAAATCCTGCTGGGAAGTTTGAAAATTGATCATTTCCTTCATGATGACGGATGACCCCCATTCCAATGATGAAAGAGCTGTTTAAGGCGCAACACCCTGTTCCAGTGAAAGATGCGCTGCAAATTAAAGGTCGGTTGCCGCTTTGACAGAAAAAGATTGTTCAAAAGAATGCTACTGGATGTATTTGTTAGCCAATGACGATTCAGCTCCAACCTTCTTGTTCTGGCCTCTCTAGATTAAAAAGCTCATTTCATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3215881-3215383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017703.1 Aeribacillus pallidus strain KCTC3564 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3215880 30 100.0 36 .............................. AAAAAATTGTTTAGTTTTGTCGTGCAAATGTCATGC 3215814 30 100.0 37 .............................. TTGATAATGGGCTCAACAGGAACTGGGAAAACACATC 3215747 30 100.0 38 .............................. TCGAAAGCATCTTTCATTCTTGTTGTAGGGGTGAGCGT 3215679 30 100.0 36 .............................. ATTTATACATGTATCGATTATGAAAACGCCCAAGTG 3215613 30 100.0 38 .............................. ATGAATCAAAACAGGAGGAAGGAAGTAGATGAAAAAGA 3215545 30 100.0 36 .............................. GTGGAAAATTCAGAAGCAGGAATAGCTGTTGTCATA 3215479 30 100.0 38 .............................. ATCTTCTTGTAATAGTGATCACGGAGTTCCGGCGCATA 3215411 29 93.3 0 .......C.......-.............. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.2 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : ATGTGGAACAGCCGTCTGTTTCATTATATAAGAGAATAATGGAAGTTTTGGTAAATTGAAAGAAAAAAAGGGAATTTTAAGTAAAAAATACCATTCGTTTTTCAGATCATGTTCTTATTTTAGATCGTAGGAACCGATCGAATAGACCTAAACCAATTTTTCCAGAATGAAATGTTAAATATGGTCTCACTCTTCCTTCAATTGAATGAGAAGGGAATGAGCCGGATGTTTACTTTATTAAAACAGATGGGTCAGGTAAAATGGTTGATACAACATGGATTTCATTGTCGGCAGGCAAACTTTGAAATCTGTTTTAAACGGAAATAAAAAAGAGTCGTCGACCCCCAATCGTGCAAAAATCCCCGGGGATCGACGACTCTTTCAAATCTTTATTGAGCCCAAGCAAATCAAAGGTTTGATAAAAATTCCCCTTTTCGTTAAAATAAAAATAACCAGTCAAGCATTAAAAATGAAATGCTTATTTAACAACGTTTTTTGGG # Right flank : TTTGTAAAGTAGCCAATGAATCGGCTACACTTAACTGGACAATAAAATTAAGGTCAAGTAGACTAAACACCAAATTTGGGTATACTGCTTATATTTGTTCCCTTTTCATTTCAACACATGCATTCCAACTCAGGCATGTGTTTTTTTATTTCAAAAAAATTTGATAATATAAATAAAGGAAATTTTGGAATTGTGGTGGGAAAGATGCTAGAAAAACTATTAATTGAACTTGCAAAAAAGGTAGATTGTATTTACACATTAAGCTCCAACAACCCAAATTGGATAACAAAAGTTGATTCAAATGGGTTTTATGTGGAAACAGAAAAATCGAGAGAGAAATTTAATAATGGAGAACAGGATAAGCCTTGGGAATATATCCCCTTTGACTTTATAAGAACTGGCTGGAATGAATTTATAAAGGTACGAACCGCCAATTCAAAAGATTTTATAAAAACAAAAGGAAGATCATCTTTTTTAATGGCCTTTTTTCATGAACTTCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3245327-3244897 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017703.1 Aeribacillus pallidus strain KCTC3564 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3245326 30 100.0 36 .............................. TTGAATCATAAATCCCCCCCCATTCAGGGAATCGGC 3245260 30 100.0 35 .............................. TTACTTCTGCAATGTCTTGTTTTCCATATTTAACA 3245195 30 100.0 35 .............................. TCTTTCTTTTTCTTTTGGATCGGTGCAATCAGAGA 3245130 30 100.0 38 .............................. ACCGTAACTCTCATTCTTCGTGAACCTAGCGCTATTGC 3245062 30 100.0 38 .............................. TGGGCGTAAAAGAATGAGATTTATTATTTTGCATTTCC 3244994 30 100.0 38 .............................. TAACAAGACGGTCATCCGGTCCTTTATTGAAGCCGAAT 3244926 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 37 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : CTCAAAAACACAGCGTTTTACGCATTGAATAAGGTCTCACTCTCACCGCAAATGAGAAAGAAGGATAAACCCAGAACACAGCGTTTTATCCGTGGAATATGGACACTACCGGATGATGCCGCTTAAGCGTATTGATTTCAATACTGTTTAGTTCAGAGACCGTGACGATGATGGTCTATCTCTCTAACCATTCAATGGAATAACAAACGGCATGAACTTCTAGTTCGGCTGTTTGCTTTATTAAAACAGATTGGATCAGGTAAAATATTTCAGATAAAACACGGATTTGATTGTTGGCCTGCAAACGTGGAAAGCCTGTTTTAAATGAAATTTGTCGTCGACCTCCAATCGTGCAAAAATCCTGGGGGATCGACGACTCTTTTAAATCTCCAATGAGCCCACGCAAATCAAAGGATTGATAAAATGTAACTCCTTCGCTAAAATAAAAATAACTCATAAATCATTTTAAACTAAATACTTATATAACAGCGATTTTTTGG # Right flank : AAATGAGCAACCGCATATGATTCAATGAATTCTCCGTAAAAACATACTAAGATTAGTAGCACAGACCATGGCCATGGTCTGTGCTACTATTTTTTTATAGTAGAAGTGGAGAATAGGTCGTGACAGCCCCAGAACCTTGAGATCGTAATGAAAAAACTGGCCTACTTCACTGCCCTTATAAGAATCAGTTTCAGTATGTTGGTTCCTTGAGATCGTGTATAAGAAAAGGGAATCGGTAAGGTGAAGTGAAGACTTCTACATAAAAATCAGGAGGAATGTATATGCAAAGCGTCATTGCTTTTGATGTCAGTATGGGAATACCTCAATATCATAAATAACGATAACTTGCTTATTGTTGTATTCTTTAAATGTAGGAGTAATGTCTCTTTGTTGTTTTGAAGGTTCTTTATCATGTATTTCTGAAAAAAAATGACAATTGCATGGTATCATTCATTTTAGTAGTCTTTTGATTACTCATAAAAAATCGCCCTCTTTCTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 3252742-3252323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017703.1 Aeribacillus pallidus strain KCTC3564 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3252741 30 100.0 36 .............................. TTGAAAAACACCACGTCCCACTTCACGTCCGTCTAA 3252675 30 100.0 36 .............................. CTTTTCCTCTTCTGACCGTCTTTTTTCCGTTCATCG 3252609 30 100.0 37 .............................. TAGTACAAGTTTTCTCCTAATTTAATCACCCAATAAT 3252542 30 100.0 29 .............................. CTCTCCGTCTCTGGTGTCTGTTGGGTCTG 3252483 30 96.7 35 ................C............. TCATCTATCATTTCAGTTCTTGCCTCAGCTGCAGC 3252418 30 93.3 35 .......................A....G. CCTGTTGTGGATGGCGTAATTTCCGCCAAAAATAT 3252353 30 70.0 0 ........T..........A...AAACTTT | A [3252334] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 94.3 35 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GCTCTGCCTTTGTGCGGAGAAAAAGGGGTTGGTTTGTCTATTTTTAAGGGAACCTATAATAGATATAGATAATGTAAAAAATAGAGGGTGAATCTGCCAACTTTTTTCTTAAATCGATATTCGATAAGGAATGTTTCCTCGTATTTTTATCCCATCGCCATGCGTTTGACCTTTTTCTGTCATTTCATGAAGGATGGACAGGTTTCGGTAAGTATGCCATTCTTTATTTGGAGGTCGGAATTGTAATTAAGTAAGAGGTGTTAAATCAAGTTCCAAATGATAGAATTGTTGATCGGTACATGTGGAACACCTGTTTTAAACATAATAAGATTTGTCGTCGACCCCCAATCGTGCAAAAATCTCAGGGGATCGACGACTCTTTCAAATCATCATTGAGCCCATGCAAATCAAAGGATTAATAAAATGTACCTCCTTCGCTAAAATGAAAATAACCAATCAACCACTTTAAACCAAATACATATCTAACAACCATTTTTGGG # Right flank : AAACAAAAAAGCACGGCCAATGTGAAGTGACCCATGTCAAGTAGACAGGAACATTTTTATCCATCTTTCAGTATTGAAGTATTTTCATGATATACAAGCCATACTTTTTTAAGAAAAAGAAATCACGTATCTATTTTTATAGCGATCATCTCTACAATCCAGCAGGAAATTATGCACAGACTTGTGAAAGATAACGGGCAATCTTATAAAAAATGTATTCAAAAGTGATAGCTTCAAAACTATGAAATTCGTAAGTACAAAGTAAAAGAAAGCGAAAGAATGAAACACCATGAAAGACGAGGAAGCTCATCCGGATCGTACCAATCGGGAAGAAAGAAGTTAAACTGCAGCCAATCGAATGCTAGACGAAAAATCTGTAGAGCGCATATGAATCCATATTCAAAAATCCTTCAACGCTTAATTGTTTCATTTCCGACGAAGTCGTCCGGGTTGCGTTCTCCAATCCGCAAACTTGGGACGAATAATCATCTGATCAAAAC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 3279145-3278516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017703.1 Aeribacillus pallidus strain KCTC3564 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3279144 30 100.0 34 .............................. CACGCTTACCATTCACAACAACACCGATTGTCAA 3279080 30 100.0 36 .............................. GTCGCTCTCCTGAACGCATCAGGAATGCGAATTTCT 3279014 30 100.0 38 .............................. ATTCTGATAAAGAGGAATTCTCATGGATTTCAAAAGGT 3278946 30 100.0 38 .............................. TATAATGTCACAAAAGATAATGCAATGTCTGGTGATGA 3278878 30 96.7 37 ............................A. TTTCGTAAACTTCCTAATTTCGCCACGGTTGATGATA 3278811 30 96.7 36 ............................A. TACTTTCGAATTCGTTCAAGTAGTTTTCTTTTTTCT 3278745 30 93.3 38 ................C...........A. GTTTGCATGCGCTGAGGATAATTAACGACTGTTTCACC 3278677 30 93.3 36 .........................A..A. AAAATCTTGTGCCAGCAGGAACTATTCCATATCCTG 3278611 30 100.0 35 .............................. CCTGTTGTGGATGGCGAAATTTCCGCCAAAAATAT 3278546 30 70.0 0 ........T..........A...AAACTTT | A [3278528] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 95.0 37 GTTTTTATCTTAACTATGAGGAATTGAAGC # Left flank : ATGGAACACTTGGGTATTTAAGCCCGCTGGAGTACAAAGAGAAACACCTCAAACAGAAAAAAGGAATTTTAAGCCAATCATTTTTCAGATCATGTTCTTATTTTAGATCGTAGGAACCGATCGAATAGACCTAAACCAATTTTTCCAGAATGAAACGTTAAAAATATGGTCTCACTCTTCCTTCAATTGAATGAGAAGGATAAACCTAGAATATAAAATGAGCCGGATGTTTACTTTATTAAAACAGATGGGTCAGGTAAAATGGTTGATAAAACATGGATTTCATTGTCGGCAGGCAAACTTTGAAATCTGTTTTAAACGGAAATAAAAAAGAGTCGTCGACCCCCAATCGGGCAAAAATCCCCGGGGATCGACGACTCTTTCAAATCTTCATTGAGCCTACGCAAATCAAAGATTTGATAAAAATTCCCCTTTTCGTTAAAATAAAAATAACTGTCAAGCATTAAAAATGAAATGCTTATTTAACAACGTTTTTTGGG # Right flank : AAACAAAAAAGCACGGCCAATGTGAAGTGACCCATGTCAAGTAGACAGGAACATTTTATCCATCTTTCAGTATTGAAGTATTTTCATGATATACAAGCCATACTTTTCCAAGAAAAAGAAATCACATATCTATTTTTATAGCGATCATCTCTACAATCCAGCAGGAAATTATGCACAGACTTGTGAAAGATAACGGCCAATCTTATAAAAAATGTATTCAAAAGTATAGCTTCAAAACTATGAAATTCGTAAGTAAAAAGTAAAAGAAAGCGAAAGAATGTGTAATGCACCCCTTTGTCAAGACACAAATTGATAATATTTAAGTTATCCATTCTCTCCTTTCGCTATGAATGTGGTGCGTGTGCGATAAAGGCTTGACATGGAGCCTCTACGGGCACGATTTTTTGCGCTGGAGCGATGGACAGATAACATCGCATGGCTAAAACAGCCTATCATGCCCGTCTCTCCATATAAAGCCTCTCATCACGTTCGATGGTTAG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //