Array 1 213493-211753 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSV01000004.1 Salmonella enterica subsp. enterica serovar Hadar str. SA20026260 Hadar_mirahybrid_c4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 213492 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 213431 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 213370 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 213309 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 213248 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 213187 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 213126 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 213065 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 213004 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 212943 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 212882 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 212821 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 212760 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 212699 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 212638 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 212577 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 212516 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 212455 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 212393 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 212331 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 212270 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 212209 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 212148 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 212087 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 212026 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 211965 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 211904 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 211843 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 211782 29 100.0 0 ............................. | A [211755] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232032-230174 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSV01000004.1 Salmonella enterica subsp. enterica serovar Hadar str. SA20026260 Hadar_mirahybrid_c4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232031 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 231970 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 231909 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 231848 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 231787 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 231726 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 231665 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 231604 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 231543 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 231482 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 231421 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 231360 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 231299 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 231238 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 231177 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 231116 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 231055 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 230994 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 230933 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 230872 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 230811 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 230750 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 230689 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 230628 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 230567 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 230506 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 230445 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 230384 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 230323 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 230262 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 230201 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //