Array 1 357261-358153 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMXQ01000001.1 Streptococcus salivarius strain BIOML-A29 scaffold1_size538886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 357261 36 100.0 30 .................................... TGTTGAATACGGAACTGAGCAATGCGTTGG 357327 36 100.0 30 .................................... AATACCAAATGCTTCAAATACTTCAGAAAG 357393 36 100.0 30 .................................... TTTCGCTCGTATGCTTAACCGCTTCGCTCT 357459 36 100.0 30 .................................... TAGCTTGTGGTGCTGTATCTGTTTTCGGTC 357525 36 100.0 30 .................................... TTCTACTAAATTCTGCATTTTAATCCTTTC 357591 36 100.0 30 .................................... TAATCTCTTTGATGTCAGTCCCAACCGCTG 357657 36 100.0 30 .................................... TGTTATTCAGAACTTTGTAAGTAAAGGTGT 357723 36 100.0 30 .................................... GATTGGTCTTTTTCTTGCCGAACAATGACA 357789 36 100.0 30 .................................... CAAATGCTGAAACAGCAACGTCGTTGGTAG 357855 36 100.0 30 .................................... TACTGGTATGACTAACCTTGGTAATGGTAT 357921 36 100.0 29 .................................... AAAACCACCAACCCAACATAAAGGAGCTA 357986 36 100.0 30 .................................... CTCCGGGCTTGCCGTAACTATAATCGTCAA 358052 36 100.0 30 .................................... TATCGCGAATGGTAATAGCATCTTCATCTA 358118 36 88.9 0 .............T...............A....GG | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATCAGTCAGATGGTCAAAAAGTATCCAAACTTAACCTTTATCTTATTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTGAATATTTTATCTGACCAGGTAGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCCTTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGCCTCACACTTGTTGATTCTGTAATTTTGAATATTCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATGAAAACGTCAAAATTTCATTTGAG # Right flank : GTTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTCACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAATCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCTGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 320459-322341 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMXQ01000002.1 Streptococcus salivarius strain BIOML-A29 scaffold2_size432022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 320459 36 100.0 30 .................................... TCTTCTGAATGGAATGTTTTGCTTCGTACT 320525 36 100.0 30 .................................... ACTAGGCAAGTATATCAAGCCTAAGTGTTA 320591 36 100.0 30 .................................... ATGCTAAAGTATACACTATGGAAGACTATG 320657 36 100.0 30 .................................... CATTCTACTTTGTTAGCATTATAGCGTTGT 320723 36 100.0 30 .................................... AGAAATTCAGCATAATTCTGATGATAATTA 320789 36 100.0 30 .................................... GCTTTAGCAATAGCATATACATAAGCACTA 320855 36 100.0 30 .................................... TAAAATGGTCTACAATCAATTCTAGACCCT 320921 36 100.0 30 .................................... CGAAACTCACCACGGTATCGGTAAGGCTCG 320987 36 100.0 30 .................................... GTTAGGGAAATTAGCTACCACAACCCCAGA 321053 36 100.0 30 .................................... CGTGGTGTTATCTGTCACGCTATCAGCTTT 321119 36 100.0 30 .................................... TTATGATTTAGCAGATTTTGAAAGCATTCC 321185 36 100.0 30 .................................... CACGCGCAACTTTAAGGATAGCCATGAGCG 321251 36 100.0 30 .................................... TATCATCAAACACTAACGACTGTATCTGGT 321317 36 100.0 30 .................................... TCATTACCTAACGTTTTCAAGTTACCAATG 321383 36 100.0 30 .................................... ATTGACTTATTCAATGCTCGGAAGCCGTAA 321449 36 100.0 30 .................................... CCTTGCTGGAGAAATTAGGCTACTCCCTTC 321515 36 100.0 30 .................................... CTCCTGTGACTTTTGTAAACACATCTTCTA 321581 36 100.0 30 .................................... ATAATTAATTAAATAATTGAAGCGGTGGGA 321647 36 100.0 30 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCTA 321713 36 100.0 30 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAGT 321779 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 321845 36 100.0 29 .................................... AGTTTCCTCACTAGCTCACTGCTACGGCT 321910 36 100.0 29 .................................... TTCAAGCTCGAAATTTAGAAAAGGGCTAG 321975 36 100.0 31 .................................... AGATAAAATGCGTTGTCCATTAAGGATAAGA 322042 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 322108 36 100.0 30 .................................... ACGTCTCTAATGTAGTTATTTAGATTGTTA 322174 36 100.0 30 .................................... TTCCAAAATGTTACCCCCCTATTAGAAAAC 322240 36 97.2 30 .........................A.......... ATAGGTATTATATGTCCACTTCTCGTTTTA 322306 36 83.3 0 ............AC...............T..CTC. | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTAGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCGGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAAGACAGTCTACGAG # Right flank : CCTCTTTATAACGATTTTCGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTGGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //