Array 1 344124-343853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAB010000012.1 Pectobacterium brasiliense strain NAK:466 EMADGDCC_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 344123 28 96.4 32 T........................... TACGCAATTGACCGAGGGCTGAGCGTAACGAA GA,T [344116,344119] 344060 28 100.0 32 ............................ TAACTGGTGATAGATTTTTTACGGTAATGCCG 344000 28 96.4 32 ...............A............ GCGACCTGATTGAACGGATCAACAGAGAAAAC 343940 28 100.0 32 ............................ AGGGCGCGTGGGTGCGACTGGAAGATAAAGAG 343880 28 78.6 0 ...........T.C........CG.CG. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GACGATGCGAAAAAGTGGCATTTCTAAGCTGCCTATACGGCAGTGAACCCCAGCTCTGATAGTTGGTTGGCTGTACTTGATTTCTAAGCTGCCTATACGGCAGTGAACGCTGTGATCGAACCGTGGCGCTGTGACGTGCTTTTCTAAGCTGCCTATGCGGCAGTGAACCCGGATTTTGTCGAGTTCCTCACGCGTCCATCTTTCTAAGCTGCCTATGCGGCAGTGAACGCCAGCCCCATCACGTAGGCTTTTCCGTTCAGTTTCTAAGCTGCCTATGCGGCAGTGAACTCAGTAATTTCTATCCCGTGGGTTTTAGCAACTTTCTAAGCTGCCTATGCGGCAGTGAACCTGTATGTCATTGCACGATGCGACGGTCGGCCTTTCTAAGCTGCCTATGCGGCAGTGAACAACCCTACCGCACAGGCCATTAATTTTCGTCTTTTCTAAGCTGCCTATGCGGCAGTGAACATGGGCCGGTTAAGGCCCACTGGTTAATGACA # Right flank : TTATCGGAATGCGTCACTGGTGCGACGCATTTTAGAGGCTTATTCCCCGTGGAGGGTAACCACCAGCGAGCGGCTGCCACCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCCGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACATTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 352864-352116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAB010000012.1 Pectobacterium brasiliense strain NAK:466 EMADGDCC_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 352863 28 100.0 32 ............................ ATGCCCCCGCGCCACGCGCCTTCGCGGTAATG 352803 28 100.0 32 ............................ GAAAAGCGCCCCGCAGGCTCATCGTGAAAAAG 352743 28 100.0 32 ............................ ATGCTTCCCACTGCATATCTATGTCTTCATCG 352683 28 100.0 32 ............................ GCAGCGAACAGCACACGCTGTGCGATGGCCGG 352623 28 100.0 32 ............................ AATTACCGATGATAAAGCGAAGTAGAATGCAC 352563 28 100.0 32 ............................ CTAAAAACCGCACTGAGGAAATTGCTCAGGCC 352503 28 100.0 32 ............................ TCGACCGCAGGCCAGCCCAAAAAAAACCACGA 352443 28 100.0 32 ............................ AGCAATATTTGGAATACCTTCGCGGCTGCGTC 352383 28 100.0 32 ............................ GAGCGCAGGGATCAACGCTGTAGTGATTGTGC 352323 28 100.0 32 ............................ AGCTACTCGTACAGTTAACGGAAAGGCGTTAT 352263 28 100.0 32 ............................ CTCCGCGCCAGTTCTGACGGGAGTGGAAACCA 352203 28 96.4 32 ...........C................ TAGGGCCTATTGACTCTTAATCAATTGGTCGC 352143 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTAGGGGGAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCTCCTAAAGTCAGGAATAATAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152952-155940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAB010000006.1 Pectobacterium brasiliense strain NAK:466 EMADGDCC_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 152952 29 100.0 32 ............................. GAGCTGATATAGCTTTCCTTTGGGCGCAACAC 153013 29 100.0 32 ............................. GTGGAACAGTCGCAGGTTGACAGAATCCCGAT 153074 29 100.0 32 ............................. GCCGCTTATAACTTCCGCGGTCTGAGCTTAAC 153135 29 100.0 32 ............................. TTATTTCACCCACTGGCAACCTCTTCCCGAAC 153196 29 100.0 32 ............................. TCATGAATTATACCCCTGAGCATTATGCAGCA 153257 29 100.0 32 ............................. GTTAGCGATGAAGCCAGAAAGCTGGAAAGTGA 153318 29 100.0 32 ............................. GCAGATGGAAAGGTCTTCGACCTCGACGAAGG 153379 29 100.0 32 ............................. ATATAAATGCGTGCCGCCCACGCCAAGCACGC 153440 29 96.6 32 ............................C TGTTTATTCATTAAGCCGCTGGCCTCCTAACC 153501 29 100.0 32 ............................. CATTGGGAGGATTTAACCCAACGAGCAGTTAA 153562 29 100.0 32 ............................. CTCGTCCCCGTCCTCGCGATCATGATTGAGGT 153623 29 100.0 32 ............................. AATCGGCGATGTGCAGGATCTGGAGTGGCGAC 153684 29 100.0 32 ............................. GCATGTTACCGGACGGGCAGGGAACCGTTGAA 153745 29 100.0 32 ............................. ACACCACCCATGAGTTTTCCCATTCACGACTG 153806 29 100.0 32 ............................. AACATCTGGCGTGGAACGGGATGATATTGCGT 153867 29 100.0 32 ............................. CTGGAAAACAGCCCGCCGCCGCCAGCACCGCC 153928 29 100.0 32 ............................. AGAGTAAGGATGTAGAGAATTAATTTCATGCT 153989 29 100.0 32 ............................. GGCTTCTACGATTTCATCTCCTGTAAATTCCA 154050 29 100.0 32 ............................. GATTTGTTTAATGAAAAACAAAGCTATCGAAA 154111 29 100.0 32 ............................. CCGGTGAAGAAAGAGATTCGCGGCTTGGCGTG 154172 29 100.0 32 ............................. GCATTCTCTATTTCTGTCTGCATATTGATTAC 154233 29 96.6 32 ................T............ TATCGTCGCTAATATCGAGGAACAAACAAAGC 154294 29 100.0 32 ............................. GAAGTTGCTCAGGTGCTGTCTGCCAGTCTGTA 154355 29 100.0 32 ............................. ATTGCAGTAGATCGGGAGAGACTGGCTGAAAC 154416 29 100.0 32 ............................. GGGCTAACGGATTCTTTTGGGGCTGCTCCTGT 154477 29 100.0 32 ............................. CAATCGGATTCAATGCAGAGCAGGCGGCGGTC 154538 29 100.0 39 ............................. AGGCTTACGAGGCGGCAGGCGGGGCAATCCGCAACGACC 154606 29 100.0 32 ............................. TGGCGTCAATGGTGTTTGGTGTTGCGATTGCA 154667 29 100.0 32 ............................. TGAGTGCTGCTGATAAAGGTGCAGCTGCTGCC 154728 29 96.6 32 .............T............... AGCGACGACGATGTGATCGCGACTGTGGAAAC 154789 29 96.6 32 ............T................ TTGGCGGCTTGTGGCGTATCTTGATTCATCAG 154850 29 86.2 14 .......T..T..G.........G..... ATGCGAGCGCGGGC Deletion [154893] 154893 29 79.3 32 .G....ATTTG.................. TAGAACTGATCTCCGCCGTGGCCGATTTGGCT A [154900] 154955 29 93.1 32 .A.........A................. CATATTGGAAGCCATTGGCGCTTATAACGCTG 155016 29 100.0 32 ............................. TTATTGGCGAAATCGTTCCGGGCCTTTGCTTC 155077 29 100.0 32 ............................. AGCGTTCCCGATACGCCACCGAATACGTCATT 155138 29 93.1 32 .A.........A................. CCCGACAGCAGGAGCAACACAAAGAAACCTAT 155199 29 100.0 32 ............................. CAAGATGCGAAAGGCCAATATGACAGAACTGA 155260 29 100.0 32 ............................. CGGTTGTACTGAACGCTGATACAGGCCTTATC 155321 29 100.0 74 ............................. GTGGATTCCGTCATGACATGACTCACTAATGCGTGTTCCCCGCGTGAGAATGCCAATCGTCTGTTAGTGAACAC 155424 29 100.0 32 ............................. TCGAACCTGTACCAGTCTCTGCCTGTCATTTA 155485 29 100.0 32 ............................. TTGGCGGCTTTTGGCGTATCTTGATTCATCAA 155546 29 89.7 32 .......T.....G.............T. TTCACGCAGCCAGCAGATGTAATGACTATCTG 155607 29 93.1 32 .A..........T................ AACTTGATGCGGAATGATCCCTCCGCTTTGAA 155668 29 93.1 32 .A.......A................... GAGTTCAGCATTCGCGGGTCGGACATGTCAAA 155729 29 100.0 32 ............................. ACATATTCAGAACGATTAATCGCGGCCCTTAA 155790 29 100.0 32 ............................. CAACACATACGCTGGAAGCTCACCGAGCTGTG 155851 29 100.0 32 ............................. ATTGGGCACCGCGAGTGCGTCATGCAACGGGC 155912 29 93.1 0 ............G..............T. | ========== ====== ====== ====== ============================= ========================================================================== ================== 49 29 98.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGATGATGCACAGCCGCCTGCAATTCCAGAGCCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGAGTGAGAGAGATGGTCTGGCAGCAGATTATTGAACTGGCAGAACAGGGCAACGTTGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAATCGACGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACGCTCTAATTTTATA # Right flank : GGGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCCGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACCCACCGTCACGGTGAGGCGCGATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //