Array 1 1460-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPP01000257.1 Leptospira interrogans strain 56635 Contig257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1459 36 100.0 36 .................................... ACAAATATGATACTGATCCTGATGCTTATGGTTTTT 1387 36 100.0 34 .................................... ATATATATGCTTATTATACTGAATATGAAAGTAA 1317 36 100.0 35 .................................... CTGAGGACTTCGTAACTATTTCACTCTTTTGTTTT 1246 36 100.0 36 .................................... GGTGATATGTTGGTTGAGAACTGGTCTCGTACTAGA 1174 36 100.0 36 .................................... CAATGGGCAACGACCCGCATTTTGCGACGACAGTAT 1102 36 100.0 34 .................................... TAATCGATTGGAGTGGCTATTCAGGTGCCGTAAA 1032 36 100.0 36 .................................... AAGAAAAACTCCAGTGCGTGCAATCGTAACACGTGC 960 36 97.2 36 .....................T.............. TATTATCAATTTTGCATAGACCTAGACGAGGCGAAA 888 36 100.0 35 .................................... CCACGAAACAGATACAAAGCCTTCTATTTTTCCCT 817 36 97.2 35 .....................T.............. GGAATCCGGTGGGAACGTTGCTGGTTTATTTTGGA 746 36 97.2 35 .....................T.............. TACGCGTAAGTGAATTATTAAAAACCATCAATCTA 675 36 97.2 36 .....................T.............. ATTAGTTCGGATTCATTGAGTTCAAAGTCTCTTCCC 603 36 97.2 34 .....................T.............. GATTAAGACAATTTGCTTTTTATGCTGAACAACT 533 36 97.2 35 .....................T.............. CAGGCAAAAAAAGACGCGGAGAGTAAAATAGATGC 462 36 97.2 39 .....................T.............. TGAAGGATTTGATCCGTTTGAATTCCTATCGGAGAAAAT 387 36 100.0 35 .................................... GATCTTACGTTATCCTTGGAGGACTTGAACCGTCC 316 36 97.2 35 .................A.................. ATCGGCCTTGATCCGAATCGACCCGAAAATCGGAT 245 36 88.9 0 .....................T........T..A.T | G [216] ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 98.1 35 CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Left flank : AAATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATGATTGGCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT # Right flank : TGAAGAAAAGATCTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTCCGAAAAACAGTACTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTGTCAGTGACGGCGA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Alternate repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 3378-3556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPP01000282.1 Leptospira interrogans strain 56635 Contig282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 3378 36 100.0 36 .................................... CAAATTTCCCACGCGTGGGAAATTTGGCTCATTCGA 3450 36 97.2 35 ............................C....... CAAATGTAAACTCAGATTTACATTTGATTGAAGCG 3521 36 94.4 0 ......................A.....A....... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 97.2 36 GTTTCTTTCTCTTATTCAAGAGGAAGTGGATTGAAA # Left flank : ATAGAGAACTTCCCCAATTGTTCTTAAAACTAAAAACTTTGTAAATGTTTACTGTTAAGTCGGATTGTTTGTTGAGTTTAGATTCAATTGTTTGTGAATTGATCTCTTTTAAAATCTCTAAAAGTTGTACAAACCAAAACACGTTTGTTAAAAATTTTAATTTGAGATGACTTCTAAAAAATTCTTTTGTTCCTTTTCCAAAAATTTCAGTTAGACGAACTTTGCCTCATGGATAGTCAGTCTTTCATCAATCTATCCTAAAACCCTGTTATAAGTTTGTCTTTGATAAGCCGATCTTTTAGAATGAATTGTTTTTTGCGAACCTGTTTCTCCCGGTAAATTACGGACCTTTCGCGCTCTTGCATGGATTCGTTGTTTGGCGATGTAACGGTTCCACTTAACAATTGTGTAATATGGTAAAAATAGGTTCGCGATTATTATGTTTAGAAAGCTTAATAGAGCATTTTATAATACATTATTTTCAACCCTATTGAGCCGCC # Right flank : ATGTCGGTAAAGTGGCCAAAGGCGAAATGGAAGTTCGTTTTTTCCTCTTACTCAACATGAGTTCCTACAATTTCAGAATTTGTTCGTAAAATTGTGATTTGCAGTAGTTCCCACATCATTTTATAGAGGCTTTGTGGTAGTTCCCACAAATCAGAGCTTGTCCCAAAACCTCAAAGAATTTTACGCAATAATTCTTTAGAAATTTTTAATAAAATGCAGTAGTTCCTAGAGATAAGTTCTCATTTGGCAATTTGCGGGCTTTCGAGTAGTTCTAATGTCGTTCCATTTTCGTAGTAGTTCCCACAAATTAAGTCACATTGTGAATATAGGTTTTAAATGCATTTTAAATTCAATTTTTGTAAAGTTTTTCGAACTAAAAAGTTTTACTGATTTTTATAAAATTAAATACCGTGAATTTTTATCCTAAAACCCTGTTATACGGTTTTGAATGGATTTTATTTTAGAAAAATCATACATCTAAATCACGTTTACTTTCATTT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTATTCAAGAGGAAGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 67-316 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPP01000377.1 Leptospira interrogans strain 56635 Contig377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 67 36 97.2 37 ..................T................. AATCTTGAAATTGTTGAATTAGTTCTTATGTATACGG 140 36 100.0 34 .................................... GATTAGGAAGGGTTCCGCCGGCTGGAACTGGTGG 210 36 100.0 34 .................................... TAAGATTGCCTGTTAACGTCTTTTACTCTGGCGG 280 36 88.9 0 ..............................T..ATG | A [308] ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 96.5 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : AAAAATCGGGATGCCGTTAGGCGTTGAGCACTGTCAGTGACGGCGAATTTCATGAGCCTGCATTTTC # Right flank : AGGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTAGTTTATTCAAATAAACGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTGTCAGTGACGGCGA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //