Array 1 454426-455918 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGF01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E58H1 NODE_2_length_634718_cov_21.2295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454426 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454487 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454548 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454609 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454670 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454731 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454792 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454853 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454914 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454975 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455036 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455097 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455158 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455219 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455280 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455341 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455403 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455464 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455525 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455586 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455647 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455708 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455769 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455830 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455891 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472050-474014 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGF01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E58H1 NODE_2_length_634718_cov_21.2295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472050 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472111 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472172 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472233 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 472294 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472355 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472416 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472478 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472539 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472600 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472661 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472722 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472783 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472844 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472905 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472966 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473027 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473088 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473149 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473210 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473271 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473333 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473436 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473497 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473558 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473619 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473680 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473741 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473802 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473863 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473924 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473985 29 96.6 0 A............................ | A [474011] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //