Array 1 6448-5357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJC010000004.1 Listeria marthii strain FSL W9-0646 NODE_4_length_479122_cov_113.512388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6447 36 100.0 30 .................................... GACCGTCTACTGAAATAGTCCAAGATGGGT 6381 36 100.0 30 .................................... GTGAAAACTTCTTGTCATCAATCGGGATAA 6315 36 100.0 30 .................................... CAAATTGATCGACAGACCGGCCATGACTTT 6249 36 100.0 30 .................................... CCAGCATAGTTTTAAGTTCTTGGTCTGACG 6183 36 100.0 30 .................................... GTATGGGTATAACAGGTATTCAAGACATTA 6117 36 100.0 30 .................................... GGCGTCCAATAGAGTCAAATGGGCGTATAT 6051 36 100.0 30 .................................... TGATACGCAAAAATATCTATCGTCATCAGC 5985 36 100.0 30 .................................... ATGGTTGTCAAGTACAAATATATGAAAAGA 5919 36 100.0 29 .................................... TTTTTTGAGGAAAATTATATATCACTTAG 5854 36 100.0 30 .................................... AAGGTTTAACGATGTCGCATAAGCTTAGCA 5788 36 100.0 31 .................................... CGTCCTTTTTTAAAACACCTAGTTCCCGCTA 5721 36 100.0 30 .................................... TTGTCGTCGGATCTACTAAGTAGCCATAGA 5655 36 100.0 30 .................................... CAAAATGTTGTCAATTCAAATAAAACGGTT 5589 36 100.0 30 .................................... GAACATTGGTGGTAATGGTTGGACAAGTTA 5523 36 97.2 30 .....................T.............. TAAAAAATGACCATCACAGGTTACTGAGAA 5457 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 5392 36 72.2 0 ......A..T...A......A..G..A.G...T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGTTGACTGCGACGATTAGTGAGTTAATAGGTTACGAGCTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTTTATAAATATTTATCAAAGAAAAAGTTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGGTAGAATTAAGAAAGTATATTTCTTTGTATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAATAGACGGCTTTTCGCAGGTTATTTTGGATCCAGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATGAAAAAATTCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGCCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGGTTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACCCCTGAAAGCTTGATTTTAAGCGACAGAGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 640271-636156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJC010000001.1 Listeria marthii strain FSL W9-0646 NODE_1_length_907624_cov_90.091445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 640270 29 100.0 36 ............................. CTTTACGCATAACAGCTTGCCCGTTCGTTCCAACAC 640205 29 100.0 37 ............................. TTCAAAATCGCAGAGGACGAATTTATAGCTATTTCTA 640139 29 100.0 36 ............................. AATTTTACTAATTCCTTTCGCCATTCTATCCCAGTC 640074 29 100.0 36 ............................. ACGTGAAGGCATATCTAGTCCACTCACTTGTAATCG 640009 29 100.0 36 ............................. ACTGATAACCCTAATTTTGTAGCAATTGCTGAAAGT 639944 29 100.0 37 ............................. TCCAATCATATTTGAAAACTTCAAAGTCATAGAAAAT 639878 29 100.0 37 ............................. GAGGCATTATTATTTATAATTTCATGCACTGCATCGA 639812 29 100.0 36 ............................. TCAGCAAATAATTTTTCTGCCTCTTGTTTTGCCTCT 639747 29 100.0 37 ............................. TGCCTTGGAATGCAGTTTTTACTGTTTTAGCATTACC 639681 29 100.0 36 ............................. GTAATTCGTTTCTGCGTTTTCATTTAAGAAATCAAT 639616 29 100.0 36 ............................. TTTGTAACGCCCTGTTTTTTCGTAACGATCAAATAC 639551 29 100.0 36 ............................. AAACTCTGTTGCATTCTGATTTTGATTTGCTTCAAC 639486 29 100.0 36 ............................. TAGTAATCGAATGTAATAATTTTCTCGTCAATCTCT 639421 29 100.0 35 ............................. CTGGTACAGTCGATTTAACTATTCGAGCGTATATG 639357 29 100.0 37 ............................. TTTGGAAACATTTCCTACACCAGTTGTCGGAGATACA 639291 29 100.0 35 ............................. GTCACAGTGTACTCGATTGTTCCATAGGTATCTTG 639227 29 100.0 36 ............................. TCTGATTCACATGTAAAACTATAAACAACCTCATAC 639162 29 100.0 34 ............................. AGCAGTACTTGATACAAACAAAGTTAACTACACA 639099 29 100.0 37 ............................. GAAGTATTTCAGTTTTTTGATTAGAATTAAAATTTTT 639033 29 100.0 36 ............................. AGAAAAAACAAAATGTAATTGCGCTCGCTTTTAACA 638968 29 100.0 34 ............................. CTCGTTCGTAAAAGAATTTCTTTTGCTCTTCTTT 638905 29 100.0 36 ............................. TTACCTCACTAAATCTTTTGTTAACTTCAAGTTCTC 638840 29 100.0 36 ............................. AAACAAATTATAGAAAAAGATAAGCGAAAACAAACG 638775 29 100.0 35 ............................. TCAATCAATCCAAGACAGTAGCTTTTTTCTGCTGT 638711 29 100.0 38 ............................. AGCGTTTTATTTTCTTTAGCGTAAACTACACTAGCCTT 638644 29 100.0 37 ............................. TAACGTCAAGCTCTTTTTCTGCTTCATCACGTTTTAA 638578 29 100.0 36 ............................. CTCAGATAGAGAAGAAAGTTGCAAAGTGGGATGAGA 638513 29 100.0 37 ............................. ATCAAACCAAGTAAAATCGTGGGATGGTTTGAGATTA 638447 29 100.0 36 ............................. AACATTTTACGGCGTATGTAGATGCTTCTACTGATT 638382 29 100.0 36 ............................. AATCTATAGTCTGAATTCTTAAGAACAACTACAAAA 638317 29 100.0 35 ............................. TTTTTTGAGGTCATTTACTGTTTTGCACTCGGAGT 638253 29 100.0 36 ............................. ATGGCAGAAAACCAATCCGTAAGAGCCAATACATCC 638188 29 100.0 35 ............................. TCTTCAGCGTCATTCGCTGTTGCATAATCTTTTGG 638124 29 100.0 34 ............................. ACCGCTGTTTCTGTGTCTGGGATTTCGATTTTAA 638061 29 100.0 35 ............................. AATCCTTACTCAATTCTATATGAGCTAAAAAAGCT 637997 29 100.0 36 ............................. AAAGTTTCGGCAGAAAAAGCGCTGGGCCTAAAAAGT 637932 29 100.0 34 ............................. AGAAAAAGCAGCAGAAAAAAGATTAGAACTTATT 637869 29 100.0 36 ............................. GTCTATAGCCAAGCAAATCCACCAGTTCCTAAATCT 637804 29 100.0 35 ............................. GTCTATAGCCAAGCAAATCCACCAGTTCCTAAATC 637740 29 100.0 35 ............................. TCATAGAAGACACAAAAATGGAAAATACTCACAAG 637676 29 100.0 38 ............................. ATCCATAATATCCACATTTGCCATCGAGCTTTTCTAAA 637609 29 100.0 35 ............................. ATTCTAATTTTGCAGTTGTTAGTCCTGGCAGCGAT 637545 29 100.0 34 ............................. AAACTTGCAAAACTCAATATATAAAGACCCTGTG 637482 29 100.0 36 ............................. TTCGGTTTTGAAGTTCGTAATCTTTTGGGTACATAA 637417 29 100.0 34 ............................. ACAATTCCTGTATTATATTGTCCTGAACATCCTT 637354 29 100.0 37 ............................. ATTGCATCTATGTGGTGTATTTCGCCTCTACGGCCTG 637288 29 100.0 34 ............................. ACAAATTTTGTAAGTCCTAGTTTGTACTTTCCGC 637225 29 100.0 38 ............................. ATATTTACCATCAATCAAATTTTGTTTTTTGTTTAACC 637158 29 100.0 35 ............................. CAAATAGTGAATGGAATTATTCAAAAGTTTTTAAG 637094 29 100.0 38 ............................. AGCTTCATTTTGCGCATAGACTTCTGAAAATGTTTCGT 637027 29 100.0 36 ............................. ATATTTATTGCATTCATATACTAGTAGTGAGCTACC 636962 29 96.6 34 ....C........................ ACACAATACTACTTTGTACTGTCTTAGCAATTGA 636899 29 100.0 36 ............................. CTTGTTTTTTTATCACTGACTCGGATTCTGTAGTAT 636834 29 100.0 36 ............................. AAACCAAGCTAATTATTCAAATAACAACCAAACAAG 636769 29 100.0 34 ............................. TTGTTTGAGCAAAAGAAATAGCAGCCGATTTAGC 636706 29 100.0 36 ............................. CACACTACCAAATTATTTAGCAACGATGCTGAATCT 636641 29 100.0 36 ............................. ACGATATTAAACCAGTGATACTGCTTTGCCGACGTA 636576 29 100.0 36 ............................. GCGAGAAGGGCGTTTTTAAGGGGAGAGGACTTCGAG 636511 29 100.0 36 ............................. GCATTTAAAGCTTTCATGAACGGGCCGCCGAGATCA 636446 29 100.0 37 ............................. TAACTTCTATTCTCTTACCGTTTTTTTCGTTAACACC 636380 29 100.0 36 ............................. TTGATCAAAGAATCCTTGTATCTTCTAAAAGCATTA 636315 29 100.0 37 ............................. AAAACAAACCAACACCCATCGCAGCAGCAACCACAAG 636249 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 636185 29 86.2 0 ...............C......CC....C | A [636160] ========== ====== ====== ====== ============================= ====================================== ================== 64 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAATTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATAGTTTTTTCTAGTAGACAACAAAGATGGTTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTTTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 657857-656534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJC010000001.1 Listeria marthii strain FSL W9-0646 NODE_1_length_907624_cov_90.091445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 657856 29 100.0 35 ............................. TGTTGCTGGTTTTGCACCTTGGCTTTTGTTTGCAG 657792 29 100.0 38 ............................. ACCCAGTTACTAACATAAAAGAAAGAAGCAATTGCATC 657725 29 100.0 34 ............................. AAGGCGTTAACGTAAAAATCATTCATACTGCCGT 657662 29 100.0 37 ............................. GCTTCTACACATAAACCTGTATGCGTATGTCTTAGCT 657596 29 100.0 37 ............................. GAAGCTTTGGAAATTTTATTTATCATTTGCTGATCTA 657530 29 100.0 37 ............................. ACGATACCACGCAAATCAACAGAATTTATTTGTACAC 657464 29 100.0 37 ............................. AAAATATATCTCAGAATAGCATCATTCGCATTTAAGC 657398 29 100.0 37 ............................. TTAACTGCCATAACTGGCTTTTTTTCTTTCGCTCTTC 657332 29 100.0 36 ............................. GCTTCCGCTTCGATGCCAACACTGCTCATTGCTGCC 657267 29 100.0 37 ............................. TCGTCAAAAACAAAAAAAGGTTCAATTTTTCTATCTG 657201 29 100.0 34 ............................. TATGAATGGGTAAATGAATATGTAGATAGTAAAC 657138 29 100.0 35 ............................. AACGTTAATGAAGACTGATATTGAAAAAGCAATGA 657074 29 100.0 34 ............................. GCTGGTAGAAGAATATTATTAATAGATGGCGAAG 657011 29 100.0 34 ............................. TCGCAAGGTCCTTTCAATGTACTGTAACTTATCT 656948 29 100.0 36 ............................. ATCATTAGCGCACTTACCGGTTTGAAAGATGCGTTT 656883 29 96.6 34 ..A.......................... AAAAACATATTTAAATATCCCTACGCTTTTAAAC 656820 29 96.6 35 ...C......................... ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCAT 656756 29 100.0 35 ............................. GAGGTTGGTTTTGATTGCTCGGGACTAGTTCAATG 656692 29 93.1 35 ..............A..........G... CTGACTAGCACTAAAAAACGATTTCCAATTTTTGT 656628 29 96.6 37 ..............A.............. GATGACAATAGAGGGATTTTGATTGAAAGGTCTGGGC 656562 29 89.7 0 .......T........A......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 98.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : GTGCCACTACTTCGGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACTGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGTTGGGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACTATGTAGAAAAGGATGGATTTTCATTGGTTTTTAGTCGGTCGACAGAAATAAGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCG # Right flank : GAGATTCCAAATTTTCCATTCCCTATACAAAAAAGCCATCCAACAGGATTTAGGCTTATTTTTTTCCTCCCCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCTGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACTATCACCATCCGAGCAGATTACAATATCCCGAAAAACATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGTAAAGAAAGCAACACAATTAGTGAAGTAGAGATCTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAACCATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //