Array 1 196958-192883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046390.1 Lactobacillus delbrueckii strain TS1-06 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 196957 28 100.0 33 ............................ CTCCGGGCTAAAGTCCTCATTGTCAACATAGAT 196896 28 100.0 33 ............................ TATCATGGAAGTAATCTTCGTTTTGGTCAATCA 196835 28 100.0 33 ............................ CACTTGACCGCAAAGAAACCCCGGCGGCTGCTA 196774 28 100.0 33 ............................ CCATTCGTCAGCGTCAACGTCTTCACCAAGCTT 196713 28 100.0 33 ............................ CAGTGGGTGATCGACCTAGCTAAAAGCTATGCA 196652 28 100.0 33 ............................ TTAATTAAAACCTCTTTTTCTAGCAAGTTTACT 196591 28 100.0 33 ............................ CAGGAAGCAAGACAACATGCAAAAACAGGAAGC 196530 28 100.0 33 ............................ TCCTTGCAATCAGTTGCGCTTGCAATCAGATCA 196469 28 100.0 33 ............................ CAATCTAAACAAAATTTTTTTAAAGCGTACAGC 196408 28 100.0 33 ............................ CTGTTGGAAGCTGGAAGCTGGAAGCTGGAAGCT 196347 28 100.0 33 ............................ CGAATGGTATCACACATTCAAAGAAAAATCGGT 196286 28 100.0 33 ............................ TAACCCCGAAAAGCACCAGTATGATCGCTCCGA 196225 28 100.0 33 ............................ TTTAAAAGGAACTGAGGCGCTACCCAGCTCATT 196164 28 100.0 34 ............................ CTAAAGAAATTAAGGAAATCAAGGAGGCTTAATA 196102 28 100.0 33 ............................ TTAAAAAAGGCGTTAAAAATGTTAGAATTTGAA 196041 28 100.0 33 ............................ TTTGACACAACAAACACGGGTTTAAAAGAATTA 195980 28 100.0 33 ............................ TATGTAACGCGTGAAATTAGTAACTACATTTGG 195919 28 100.0 33 ............................ TTTGGTAGTCGGTCAACTTGACCCCGGCCAAGG 195858 28 100.0 33 ............................ TAGCCGTATCCAAGCGCCCGGCAAAGTCTTTTT 195797 28 100.0 33 ............................ TTTTACCATTTTAAAATTTCCTCCTTTTACTTA 195736 28 100.0 33 ............................ CTAGCGATCACTAGCAATTTTCTGCCTTGATTT 195675 28 100.0 33 ............................ TTTGAGCCAGCATTGAGTCGGCAACCCCGCCGA 195614 28 100.0 33 ............................ CCTTTCACGGTATGCCCGTACACGGGCCGTGCT 195553 28 100.0 33 ............................ TCCATTTCCTGCAGGGGAATCTTATTTCCTGCA 195492 28 100.0 34 ............................ TAACAGGGATGCAAGCCATATTTCTTGGCAGGGA 195430 28 100.0 33 ............................ TTAATTTGTACGCCGGTTTGTGTGTTTGATGTA 195369 28 100.0 33 ............................ CAAATATATTGCCGAGAAATTAGGCATTTCAGA 195308 28 100.0 67 ............................ TATCTTCTGGCTTGTAGTTGGCGCGCTTGTCAACCACAGTCCGATAGTGCTGATCGCCGATCTTAAA 195213 28 100.0 33 ............................ CATCTTAAGATAGCGCCCGTTTAAAGCGCTTAA 195152 28 100.0 33 ............................ TTCTTGCGCTAGAATGGTCTGATATCGATTATG 195091 28 100.0 33 ............................ TCAATTGCCTGCAGGGGAATTCCTGCAGGTTGA 195030 28 100.0 33 ............................ TTTTTTAAAACTACCGCAAAGTTTTACAAGAAA 194969 28 100.0 33 ............................ TCTGTGGTTCAACAATGAAACTATTAATATCAC 194908 28 100.0 33 ............................ TGACGGCATCTTCGATCGCCCCATTGATAACGA 194847 28 100.0 33 ............................ TAGCTCAAATTACGGCCAAGCACAATCTCCCAG 194786 28 100.0 33 ............................ CCCAGGGTGGGGTCGCTCGTGAACCGAGGGTGG 194725 28 100.0 33 ............................ TGTTTGAGGGCGCAACTACCTACAACGGTACGG 194664 28 100.0 33 ............................ TCACCAAGAGCGTGTATTTGCGGCTATTGACGG 194603 28 100.0 33 ............................ TGCAAGACCTGACTGTCCCATGTACTTTTTGCA 194542 28 100.0 33 ............................ TGTCTACGATTGCGTCGTTAAGCACTGCAGTGA 194481 28 100.0 33 ............................ TTACAACATTAAAGCGATTGCCAAGCACTATAA 194420 28 100.0 33 ............................ CTTTTTGCGTTTTGTACAAGCTTTTAACGAAAA 194359 28 100.0 33 ............................ TGAACCTCAAGACATGCATGCAAGAAATGAAAA 194298 28 100.0 33 ............................ TTTAAAGAAGGATCTGCTCTTGCACGACAGCGA 194237 28 100.0 33 ............................ TGTTGTTATTAAGCATTAAAGTATTCAGCCGAT 194176 28 100.0 33 ............................ CGGCAATGAGTTTGCCGGCCGTTGGTTTAAAGG 194115 28 100.0 33 ............................ TGGCTGATTGCGGGAATCGAACCCGCTTTCCCG 194054 28 100.0 34 ............................ CTTACTTCAGCCTTTACTTTGATCAAGGTAACCA 193992 28 100.0 34 ............................ CTTACTTCAGCCTTTACTTTGATCAAGGTAACCA 193930 28 100.0 33 ............................ TGTAGCGATCGTTAACAGCTTGTAAGCTGTTTT 193869 28 100.0 33 ............................ CAGTGCCCCCGTCAACCGCAGCAAAAAAAAGCC 193808 28 100.0 33 ............................ CAAGCGACGATGAAACCGTCCGGGACGCTATTG 193747 28 100.0 33 ............................ CTGATTGCTGGGGAAGCAGAGCTTCAAACTGGG 193686 28 100.0 33 ............................ TCTTCGGCGCTTCGATTACCAGGGCTTTGCTCC 193625 28 100.0 33 ............................ TACCAGGAAGCAAGGAAGTGCACTACCAGGAAG 193564 28 100.0 33 ............................ TAACATCTAACATTTTTTAGCCCTCCTTATTTG 193503 28 100.0 33 ............................ TTTTGCCATTTTTTAATCCTCCTTAATATTGCT 193442 28 100.0 33 ............................ CCAGGTACGCTTGGTTACCTTCATAAGGTAGCA 193381 28 100.0 33 ............................ TAACCATAACTCTTGCGATAATGGCCATCCTCG 193320 28 100.0 33 ............................ CGAATGTCATACAATGACGGTCAAGGAGTGGCG 193259 28 100.0 33 ............................ TGCCACGGGTGGACAGATACTCACACAAAACAG 193198 28 100.0 33 ............................ CGGGCTAGTCATGATGTACGCTGGCTACTCTGA 193137 28 100.0 33 ............................ CAATGGACTTTTTTTGGTGCTCCGTGAGCCGCC 193076 28 96.4 137 ...........................T ACACCCCACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACATGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 192911 28 78.6 0 ...........AT.T.C....A.....A | T [192904] ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 65 28 99.6 35 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAACTGATCAGATTTTATCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAAGGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGTATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAACATGAGCATTTACGGTAAGTACGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAGAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGCGAAGAAAGCATGGCGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGATGCCAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCACCT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //