Array 1 932501-933932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 932501 29 96.6 32 ..........T.................. CTTTCCGAATTAATGACGGAGTTATCGATATA 932562 29 96.6 32 ..........T.................. AGTCGGCTTGGACGTTGACGGCACACCCTTCC 932623 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 932684 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 932745 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 932806 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 932867 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 932928 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 932989 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 933050 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 933111 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 933172 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 933233 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 933294 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 933355 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 933416 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 933477 29 96.6 32 ............................A CTCGGATGGTTACGCCAGATGTATGCAATTTC 933538 29 100.0 32 ............................. TGTTCTCCTATCTGCGGCAAATTAAGCTGAAT 933599 29 100.0 33 ............................. AAAACTTGATACTCGATTATCGCTATCCCCTGC 933661 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 933722 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 933783 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 933844 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 933905 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 943070-944746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 943070 29 100.0 32 ............................. AGAAGAATTCTTTTGCCTGCGCGTCGTTCATA 943131 29 100.0 32 ............................. TAACTGACACTGAAAGAAATAACCCTCTGTGG 943192 29 100.0 32 ............................. CCGCGCCGGTGTGGCACCTCCACGAATCGTTA 943253 29 100.0 32 ............................. GCGCAAATACGCGGCGGTGCAGCTACCGAAGC 943314 29 100.0 32 ............................. ACGCCCTGCACAATAATTTACGGCGGGACACT 943375 29 100.0 32 ............................. TGCCACCGGCGTGCTCCATATGACGGGCGTTT 943436 29 100.0 32 ............................. AATTCAGGAATGTTTTGCGGGTAAATTTTGTG 943497 29 100.0 32 ............................. TCCACCGGGAAAATAGTCCAAATGGCTAACGC 943558 29 100.0 32 ............................. CGCAGAAGGCAGCGGGCAGTGTCAGCGCTGAC 943619 29 100.0 32 ............................. CACAATGAAGAGGGAACAACAAATGGACTCAG 943680 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 943741 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 943802 29 100.0 32 ............................. GTGCACGTTAGCCGCGTAGCTGAATTAGGTTG 943863 29 100.0 32 ............................. GGCGAGCAGATAAACACCGAAAACCTGCACGC 943924 29 100.0 32 ............................. GATTTATCAAATGAAACTCTTCCACGGCAGCA 943985 29 100.0 32 ............................. GATTTATCAAATGAAACTCTTCCACGGCAGCA 944046 29 100.0 32 ............................. CCCATCAAGATAAACATCATAGCGAGCACCTG 944107 29 100.0 32 ............................. CGGCCGAACGTTACGGCGACGAGGTCGAGAAA 944168 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 944229 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 944290 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 944351 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 944412 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 944473 29 96.6 32 ..................A.......... CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 944534 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 944595 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 944656 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGT 944717 29 100.0 0 ............................. | A [944744] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTAACAGACCGGAGGAAGTGAGGTGGCTTAACCATGGATAACCCGCGTTATCGCTACCACCAGCGCTCATAAATCCCGCGCCATCGCTAAACGCATTAAGTAATTTTTCCCGTAAAGCGGCGGGAAGAGTGGCGCTCAGAATAATAGCGCTACCGCCCTGGGCGGCATGGAAGCGCAATAAACCTTCCAGCAATTTAACCATATAACCATCATAGGCGTGCACTTCATCCAGCAGCAGGATTTTGTCGCGCATCCCTAGCAATCGGAGTGATTGATGGCGAAAAGGCATCACCGCCATTAAGAGTTGATCCAGAGTACCTACGCCGACTTCCGCCAGCAGCGCTTTTTTGCGTGAATCTGCAAACCAGGTATGGCACTCAGTAGTCGCGTTGCCATCATCACGGGCATAATCTTCAGCTATATTTTCTGTTGGCTGCCAGATGGATTGTCGGAAAGAGTCCGACATTTCTCGCCCACCGTGTGCCAGGATGAGCGATG # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATAGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //