Array 1 29683-30104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZX010000002.1 Listeria booriae strain FSL L7-0033 NODE_2_length_547539_cov_20.109415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 29683 30 100.0 36 .............................. CAGTGAGGGCAATCAACTTCAATGTAAACTGGTTGT 29749 30 100.0 37 .............................. ATTTAATAGCTAATAGGTGTTAGCTGATAGGGATTAA 29816 30 100.0 34 .............................. TCCAATCAATTAAAGCTGGAATTACTGGTATTGT 29880 30 100.0 36 .............................. GAAGGATTAAGTAACCATTCAAAATATAGTGTAAAT 29946 30 100.0 36 .............................. CACGACCTATTTAGACGATGAAAAAGGGTTCTTGTC 30012 30 100.0 34 .............................. AACATTTGCCGCAAACAAATTAGAGCCACTAAAG 30076 29 80.0 0 .............T...A..-...C..G.C | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.1 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : ATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGCCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCGTTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGGTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTTTGTGGGGGAAAGAGGGGATGGTAAGTGGTGTTTGGAAAGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTACAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTAGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATCGGGTACCT # Right flank : CTAGATTGCCCGCAGATGCAGTGTTCCTATCCATTTTTTATAGAATCAATTATCATTCAGCAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGTCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 51179-49578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZX010000011.1 Listeria booriae strain FSL L7-0033 NODE_11_length_120306_cov_19.622721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 51178 30 100.0 35 .............................. GCTTATGATGATACCGAAGTAGATTTAGTTCGAAG 51113 30 100.0 36 .............................. ATGAATTAAACGATTATCTCGATGACATTTACAATT 51047 30 100.0 35 .............................. TTATATGAATTTCGTATATAGTTGTCAACTTTATC 50982 30 100.0 36 .............................. GATGTTTCAGCAATTTCTAAATCACGAATCGTTTGA 50916 30 100.0 38 .............................. AAAAGTTAAGTGCGGCTAAGAAGAAGCTTGAAATTCAA 50848 30 100.0 34 .............................. GCGCTTCCGATACTTAAAAAAATGGGGACATTAT 50784 30 100.0 35 .............................. CAAATTATCGAGGCGGCAATTACGATTCTCACTGC 50719 30 100.0 36 .............................. TCGTCTTAGTAGAGTCGAAAGTGGGGAGTTACTACC 50653 30 100.0 35 .............................. CCAGATGTTGCATTTAAAACAGATGGTACAGAAGA 50588 30 100.0 36 .............................. GACTATGATACACTTCTTTTTTGCAAAAATAATAAT 50522 30 100.0 37 .............................. TTCCCCAAGAAGACACAGAGGCAGTAGAAGAAGCATT 50455 30 100.0 35 .............................. ATTTTTCCCGCGTTTTGTAACACTTCCCATTCCTA 50390 30 100.0 35 .............................. CGAACATATACGAGTCCCGAAAGCGAAAAATGGGG 50325 30 100.0 34 .............................. AGAGTGATAGAGCGAGAAGTCAATCAAAATTTCG 50261 30 100.0 34 .............................. CACGTTGCCGCCGCGTTTCAGCAAGGTAGTTCGG 50197 30 100.0 34 .............................. CAAGTCCAGTAGTGTATTTGGTGCTGGAGTTCCT 50133 30 100.0 37 .............................. GCACTTTTGCGTCGATTGTATAGTTTGAATAACAAAT 50066 30 100.0 34 .............................. TTCCTTAAATAACGCAGAAGTAGCAAGCTATAGC 50002 30 100.0 36 .............................. ATCAACAGCTACAATGAGATTTTGACGGTGCCATCC 49936 30 100.0 36 .............................. ATGTTGGGATAAGCAATACGGATGAGTTACGAGAGT 49870 30 100.0 36 .............................. ACGATTGGGAGCTCGAGAACAGCGGTGGTGGCATGA 49804 30 100.0 35 .............................. GCGTATAAGGACCAGCGATATATCGTTGCTCGATT GT [49787] 49737 30 100.0 35 .............................. AAATCAGAAATACTGTATTTACAAACTTGAGAGCC 49672 30 96.7 35 ........................A..... CAAGTTAAAAAATTCAGTTATACCGTGGTCGATGA 49607 30 90.0 0 TG.....................A...... | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.5 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACCTGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAATTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : AAGAACGACAACAATGACAATGTTTTTATCCAATCCCAATGTAAATATGAAACTCCCCCATAAACATAACATCCCCCAACCCAATAAACTATAAGCAACCACTAAACTACCCAAAGTCTATAAGTGTTTTTTGTCATGCTCAAAAAACCCATAGACTTGCTTACTGTAAATGAAACAAATAGGAAGTATAGAATATATTTCATACATTTAAAAAATATATTGGCGAAAAACATTTACAAAAATAAAATAATAGTGTAAAATTCTTTCTGAAAGGAGCGTTATGATGAATATAAATACACTAAAAGGACAATTGATAGTATCTTGCCAAGCTTTAGAAGGTGAACCTTTGCACAGTTCCATGATTATGGCGCGAATGGCGCTTGCTGCTAAAGAAGGTGGTGCTAAAGGAATTCGAGCAAATTCTCCGGAAGACATTCAAGCAATCAAAGGACTAGTGGATTTACCTATCATTGGCATTTGGAAACGCGATTATGAAGGTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 55009-55238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZX010000011.1 Listeria booriae strain FSL L7-0033 NODE_11_length_120306_cov_19.622721, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 55009 30 100.0 37 .............................. CTGCTCGAGGCCATGGTATTGATAACACGCAAACAAA 55076 30 100.0 36 .............................. ATCTAAAGCTGTCAAAACATCTTTTGTTTGAAAAGT 55142 30 100.0 37 .............................. AATAAATTCCTGTCATCCCCTGTTTTTCTGAACTTGC 55209 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : AGCTCAACTCCCCTATTATTAAGAGCAAGTTCAAATAGCTCAATGAAACTAGTAACAAGCAGAAAGGTTACAGCTACGATGACAAAAGTTAGCAAGGCAAGTGCAGCTGTTGATCGGACTAGGATTAGTTCCAGGTCTTGGTTGAATAGCCGCGGCATTTTCTGTGTATGGTATTATAAGCGAATTTAAAAATAAGACCGCTTACATTACAATCAAACAATACGCCAACAATCACCAGTATAGGAATGATTTGTATGTTTATAAAGATAGCAAACGAACACAATTATTAAATAAACAAACTGGAATTCCACAAAGACATTTTTCTTAAATGAATACATTAAATTTATGAGGCTGGTACTTTAAGTATCGGCTTTTATTTTTAATACTTAAGCTAGCCTCATATATTCAGGAAATGTGTAGATAATCGCCTATGGGCTATGTTCGCATATTTCTTAGGTAAAAACGATTAGGCGTCTACATCATGGCTATTAATTGACTTA # Right flank : CTGGTACCCCATCAACGCTTACTCCCATCATACCCCGAACACCCGAATCTGTCGACAGGTAGCCAAACCCTAAATTCCCACTCTCAAACCTTACAATCTGAACTTCGAAAATAGGCTTAAACTTTTTAGTACCAATACATAACAAAAATTTGTCGATGCCCCCATTATTTTGCACTACTGGAGGTCGACAGATTTTTTCCGCGTTATTATGAATCAAGGTTTTCTGTAGAAATTATCTTGTTCTTCCCGCCTTGCACAATCATCGCGCTATTCGCAGGGATTATTTTCTTTTCGTATTCAAAATTATTGTTCGAAAATTCGCTATGACTTGTAGATTTGCGCCGAATGTTGTTTTCTGAATGAGGCGTTCTTTATCTAGCACTTCAAATCAGGCTTCCCATGCTAAAATGCTTCCTATTTTTAGTATTATTGGATGCATTTTGGAATAGTCGTCATGGATTTAGTTTACGATTTAATCTTAAGAAACTGATCATTTTTGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 59082-58788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZX010000011.1 Listeria booriae strain FSL L7-0033 NODE_11_length_120306_cov_19.622721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 59081 30 100.0 36 .............................. TTCTTAACTGGTATGAGATATCTAGATGCATTTTTT 59015 30 100.0 36 .............................. AAAAGCGTTCTTTTTCATAAAATGGGACATCATTTT 58949 30 100.0 36 .............................. CGGGCATACTTAGCCAAGAAAACTGAAAAGTATATG 58883 30 90.0 36 ............G...C...A......... TGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTA 58817 30 70.0 0 ........A......A.TC.A...C..GTA | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 92.0 36 GTTTTTATCTAAACATTGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAATATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCTGGCACAACCAACTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCATAGGGAGAGAAGGGGGGAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : GCGTATCGGCAATTTCACACAACCCATCTACAAAATAAAAAAATCTGTCATCCTATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGTATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAAAAGTGGATTCAGCACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACCAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTACTATGAGAAGAGATAAGAGAAACCAAGGCTCGAATTATAAAAACGCCTTTATCGTAACTTGTAGCTTCTTTATTATCATTCATAT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAACATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 255337-255053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZX010000004.1 Listeria booriae strain FSL L7-0033 NODE_4_length_310918_cov_20.602707, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 255336 30 100.0 36 .............................. TCGGTCGATGTTTTGTGTAATGACTTTGGATTTTTC 255270 30 100.0 37 .............................. CGAAATGATGATCGATGGGTTTTAGAAGCTACTTTAG 255203 30 100.0 34 .............................. ACCACGGTAATAAATATCAAACAAAAAGGAATGA 255139 30 93.3 27 .................A......A..... TAGGAAAAGGGCGCACTTATACACCCT 255082 30 73.3 0 ......CC.G.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 93.3 34 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCTGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGATGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TAGTTTGTTTAGTTACGAACATTGCTTTGGCAGACTATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //