Array 1 921391-922482 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP011329.1 Streptococcus agalactiae strain H002 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    921391	    36	 100.0	    30	....................................	AGTTATCAATGCTATATGGTTTCTCATCTT 	
    921457	    36	 100.0	    30	....................................	GTTTAATTTTGAATAATATCATGTTTACTC 	
    921523	    36	 100.0	    30	....................................	TATGTCATTGTGATTGTGGGAATACTTGTG 	
    921589	    36	 100.0	    30	....................................	GGCGAACTTGTAACGTTTGACGGTAATTTT 	
    921655	    36	 100.0	    30	....................................	TAATGTCTTTTCCTAGAATGTACATTTCTA 	
    921721	    36	 100.0	    30	....................................	ATTACTTTCAAGATGTCTATGACTATATGC 	
    921787	    36	 100.0	    30	....................................	TATTTCATCATAGAAAATCCTGCTAGTGGT 	
    921853	    36	 100.0	    30	....................................	GCGATGATGGTAAGTCATCATGGACAGCGT 	
    921919	    36	 100.0	    30	....................................	TTTTACACACGATGTCAGATATAATGTCAA 	
    921985	    36	 100.0	    30	....................................	AGTACTGCACTAGGAATTGTAGAGATCAAA 	
    922051	    36	 100.0	    30	....................................	CGTACCATCTATCAATTTACCGCAAGCTGT 	
    922117	    36	 100.0	    31	....................................	TTGCTGCTAGACCCAAACAGTTTATTTTTAG	
    922184	    36	 100.0	    30	....................................	TCCTTTTTTAGATAATGTGCGATCACGGAC 	
    922250	    36	 100.0	    29	....................................	TTTTACCAATGCTTCCATATCGCTTATAT  	
    922315	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA 	
    922381	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT 	
    922447	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        17	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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