Array 1 32091-30428 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNI01000066.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41584 SEEH1584_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32090 29 100.0 31 ............................. GGGAAAATCAATAAAATCAATGATAAGCAGT 32030 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 31969 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 31908 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 31841 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 31780 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 31719 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 31658 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 31597 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31536 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31475 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31414 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31353 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31292 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31231 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 31170 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31109 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31048 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30987 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30884 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30823 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30762 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30701 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30640 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30579 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30518 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30457 29 96.6 0 A............................ | A [30430] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49350-48346 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNI01000066.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41584 SEEH1584_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49349 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 49288 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 49227 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 49166 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 49105 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49044 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 48983 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 48922 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 48861 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48800 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48739 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48678 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48617 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 48556 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 48495 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 48434 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 48373 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //