Array 1 53516-52913 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYDP01000012.1 Rubellimicrobium sp. CFH 75288 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 53515 37 100.0 32 ..................................... GCATCGGCTCGAATTGAATAAATCCAACCTGA 53446 37 100.0 36 ..................................... CTCGCGCTCATACCAGCACAGCGCATCCACGTCGGC 53373 37 100.0 34 ..................................... ACAGGGCCGACCCTAACCGCTACAGGGCCGACCC 53302 37 100.0 34 ..................................... ACATGCCGAGATGCAGGTCCGGCAGGGGATGCAG 53231 37 100.0 34 ..................................... TCGCCGTGGAGCGCGAGCCACGCCTCCCACGCCT 53160 37 100.0 32 ..................................... CAGCGCGTCCGGGGCGGCGTCCACAATCTCGG 53091 37 100.0 32 ..................................... CGACCAGATCGACGCATGGCTGTGGTGCGCCG 53022 37 100.0 36 ..................................... CCTGAAGGGGGGGGGTGGACATCACGCGTCCACCCC 52949 37 97.3 0 ...............................C..... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 99.7 34 GTTCCAGCCAATGCCCTGACAAAGAAGGGATTAAGAC # Left flank : TGCCATGGGTTGGCTGATCGCCTATGACATCGCGGATCGCCGGCGCTGGCGCCGTGTGCATGCCGTCGTCGTCAAGGAAGCCTACCGGCTCCAGTACTCGTTGTACTGGCTTCCTGCGGATGCGGCAGACGCACGTCGTCTGGCGTCGGTCCTGGAGACGATGATCGATCCGCGGCGCGATGACGTCCGCTTCTATGCCTTGCCCGACGCCGCCTGGTGCAGGCTGTGGGGCCCGAAGCCATGGGGGAACGGTGTCATCGATCCGCTGTGCCGACGCTTCGAACCCTGCTGGCGGCCCGGAATGCCCGTTGATCTGGCGGCAGTGGACCTCTAGCGTGCCCGTGCGACACCTTCGCAGGGTCCATCGTGCTTGCTCTTTGACATCCCTGTATATTTTCTTGCCGGAGCCCGCGTCTTGGCAGGCAACTTTGCCGCATCGCACGAAGGTTCACAAGGCGTCCGGCAACGTGCTGATGAAGCTGGCCAAATCGGAGCCGAGG # Right flank : CCGGCCTGGGCGACTGTCCCTTTCTCGAGGGCTACTGCTCCGGCCGTGCCTCGGACAGGGCGGACGCTCGCCCATTGGCCCCTGCGTGGCCGGCCCTCCGACGGGGTGTCGGTCCATGCGGGTCCCGAACAGGGCGATGGCCGCCGCCGTTGTGCCGCGGCGGAGCGGGGGAGGCGGGGGCGGGATGCCGGCCGGGGCGGCGCCGGGCCCTTCCGGGTCTCAGAACGCCTGCGTCGCGGCGACGGCCCGGGTCCAGCGGGCGTAGCGGGCCGCGCGTTCGGCCTCGGGCATCCGCGGCTCGAACGTGCGGTCCAGCGCCCAGGTGGCGGCAAAACCGTCGGCATCGGGGTAGAGCCCCGCCTGATGCCCGGCCAGCCAGGCCGCGCCGAGCGCCGTCGTCTCGCGCATGCGGGGGCGGTCCACCGGAGCCCCCAGGATATCGGCGAGGAACTGCATCGCCCAGTCGGACGCGCTCATCCCGCCGTCGACGCGCAACGTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGCCAATGCCCTGACAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 146084-148979 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYDP01000005.1 Rubellimicrobium sp. CFH 75288 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146084 29 100.0 32 ............................. GGATCGCCAACGGCCCGTACCATTCGTCGAAC 146145 29 100.0 32 ............................. TCATCATGGCGCGCGTCGCGGACGTGATGATG 146206 29 100.0 32 ............................. TTCCGCACCGTCCTGGACGGCTACCTTGCCAA 146267 29 100.0 32 ............................. GCGGCCAACCGGGTCGTCGTGATCGCCCGCGC 146328 29 100.0 33 ............................. GCGATGGCCCGCAACGGCGGCTCGCCGCTCTAC 146390 29 96.6 31 ............................C GCCCCGGCCGTCACGACAGGCGCCTCCACGG 146450 29 100.0 32 ............................. CCATGCATGGTGCGGAAGCCGTGGGAGGCATG 146511 29 100.0 32 ............................. GCCGTCCGCGCCGAACCCGTCGCCGCCCTCTA 146572 29 100.0 32 ............................. ATCCCCGGCCTCATGGACAACCTGCGGGCGCA 146633 29 100.0 32 ............................. ACAGACGACCCGCAGCCACGAAATCCTCGATA 146694 29 100.0 32 ............................. GGGGGGCTGCGCTACCTCGCCGTCCTGACCCG 146755 29 100.0 32 ............................. CCCCTTTTTACGGCTCATCAGCCCCGTCCTCA 146816 29 100.0 32 ............................. CCATGCCCCCGCCATCAGGTTCGCTCGCGCAT 146877 29 100.0 32 ............................. GCTTGGGAGGCGGAACAGCGCGCGGCGGGGAT 146938 29 100.0 32 ............................. GCGGCCTGCGCGCGCGAGCTGTGGTCGCAATG 146999 29 100.0 32 ............................. ATCGCCTCGACCAGCCTCTCCTCGGCCGTATC 147060 29 100.0 32 ............................. AACCTCAACATCCCGGAGCCGGAACGACCGCC 147121 29 100.0 32 ............................. CTCGCGACGGTCGGCGCCCCGGTGTCCCACGG 147182 29 100.0 32 ............................. CGGCCGCTTCTCCTGGAACACGAACAGCCACC 147243 29 100.0 32 ............................. GCACGAGAAAAGTGCCGCCCCCGTGGCCGGGG 147304 29 100.0 32 ............................. CCATTCATGCTGCTGACCTACGACGTCGAACT 147365 29 100.0 32 ............................. CAGGATGACGCGCTGCCCGGCCGTGTAGGCGG 147426 29 100.0 32 ............................. CTGGATCTTCCTGGCCTCCGGAGCCCTCAGGT 147487 29 100.0 32 ............................. GCCATCACGCGATGCGCGGGGATGATGATGCG 147548 29 100.0 32 ............................. CCGGTCATGCCCCCGCACATGGCCCCGCCTCC 147609 29 100.0 32 ............................. AACGTCACGGACGGCGCGAACTCGGGCGGCGA 147670 29 100.0 32 ............................. TGGGACTCGAAAGCTGGGGTCATGCCCCCGCA 147731 29 100.0 32 ............................. TCCATGCCGGCCCGCCGCAGGGCGAGCGGTAC 147792 29 96.6 32 ............................T CTGGCGCGGGGGTTCTTCGGCGGCTCCCGGCA 147853 29 100.0 32 ............................. GATTTCCGCCGGTTGGCGTCGCTCTTGGCCCG 147914 29 100.0 32 ............................. GGAGATACATCGAGGACGACATGGGAGAGACT 147975 29 100.0 32 ............................. CAGGACGGCCCGCCCGGCAGCTTCCGCTACTT 148036 29 100.0 32 ............................. GCGCTTCAGGTTCTTCCCTGTCCATCCACCAT 148097 29 100.0 32 ............................. ATTTGATCCCTGAGGTCCTTGGGCATGAGGTC 148158 29 100.0 32 ............................. ACGTTCATCAGGTCGAAATCGCTGCGGCCCGT 148219 29 100.0 32 ............................. GTCGGGCGCCTTGACTTGGGTGATGGTGCCGG 148280 29 100.0 32 ............................. GCGTCGGCGGAGGCGATGGCGAAGGCGAGGGC 148341 29 100.0 32 ............................. ATGCCAAGGAGATTTACCGACGCGACTACTGG 148402 29 100.0 32 ............................. CACGTTGCAGGCGGTATGCGCCGCCTTTGGCC 148463 29 100.0 32 ............................. GCGCGGCAGGAGGCGATGCTGTGAGGCGCCCC 148524 29 100.0 32 ............................. CGTTTCGCCTCGACGGCAGGCCAGTCGCGAGG 148585 29 100.0 32 ............................. GGGGCCGCCTCACGGCAGCCCCCTTGCTTGGG 148646 29 100.0 32 ............................. CTGCGCGAAGTCGTCGAGGACCTGCCGCGACG 148707 29 100.0 32 ............................. TCCAGCAACAGCACGAATCCGTCTGACGCGCG 148768 29 100.0 32 ............................. CCGCTGCCGCCGCCGCGCGGTGGGCCGAGGCC 148829 29 100.0 32 ............................. GCGGTCTTGGTGCCCGGATCTGTGCAGCCCTT 148890 29 100.0 32 ............................. ATCGTCGGGGGCCAGGCCGACATGCAGGAAGC 148951 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.8 32 CTGTTCCCCGCACCCGCGGGGATGACCCG # Left flank : TTCCGGCGCACGGGGCTTCTGACGCGGATCATCCCCCGGATCGAGGAGATCCTGTCGGCCGGCCAGCTGCCGCGTCCCGATCCGCCCCCTGAGGCGCTGGGGCCTGCCTTCGGAGAGGAGACGTCCGGCGATGATGGTCATCGTGGTTGAGGGCGCGCCGCCGCGGCTGCGGGGCCGGCTGGCCGCCTGGCTGCTCGAGATCCGCGCGGGCGTGTATGTGGGGGATTACTCCGCCCGCACGCGCGAGCGCATCTGGAGCGAGGTGGAAGCGTGGATCGGAGAGGGCGATGCCGTGATGGCGTGGAAGGCGCCGACCGATCAGGGCTTCGACTTTGTCACCGTGGGCCGCAACCGGCGCCGGCCGGTGGAGTTCGACGGCCTGAAGCTGGTGGCCTTCGCCCCGCCGGACCGCCCGCCTTGAACCGGCTCCACGCCGTGTCTCATCCGGTGCCGGAATTGACATCGTGAAGACCTCGTCGGAACAATGGTTTCCAGCCAGT # Right flank : GCCTGGTGCCCGCAACTTACCGCCAGTGCGGACCTCGTCGCCTGTCCGGCCCAGCCCGAGCACGCCCTCTTGCGGCCCTCGCACGGCCCGTAGAGGGAGGTCGGGAGTGGAGGGCCTGCCGGGGCGCCGATGTCGGCCGAGACCTCTGCGAAAGGGGGCGCCGATCCTGACCGGGATATCGCCCCCGCCGTGCAGCGGGAGGTCGTGTCCTGGCAGATGGGTCGCGCGGTATGGATGGGACGCCCGATCGGGATAGACAGGCCGCGATGCTGCGCCGCCGCCGTGGCGGCGTCTTCGCGCCGGACCGTCGGGATCGCAGGGGCGTTCCCTCTCGGACGGCGGGGGCCGGCGGGCCGGCCCCCGGGGATGGCAGGCGACGGACCTGCTCAGAAGTCGAAGTCGTTGATGTTCTCGCGCGTGAACACGGTGCGCTCGGGCAGCAGGATGATGCCATTGCCCTCGGCCTCGTAATCGTAGCCCTGGACCGAGTTCGGCGAGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACCCGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //