Array 1 858546-859833 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015558.1 Pasteurella multocida strain USDA-ARS-USMARC-60494 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 858546 28 100.0 32 ............................ TGTGCACTCCGCTTTCATCGTGTGCGTTGATG 858606 28 100.0 32 ............................ GTGCACTCCGCTTTCATCGTGTGCGTTGATGA 858666 28 100.0 32 ............................ TTTGTATCTACTAATATCACGCTATCTTGTTT 858726 28 100.0 32 ............................ GCTTTAACGACCACTTGCGCAACTGCTTTCCA 858786 28 100.0 32 ............................ ATCGATAGTGATAGTGCGTTCAGTATGTTTGA 858846 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 858906 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 858966 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 859026 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 859086 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 859146 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 859206 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 859266 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 859326 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 859386 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 859446 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 859506 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 859566 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 859626 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 859686 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 859746 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 859806 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2086997-2082468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015558.1 Pasteurella multocida strain USDA-ARS-USMARC-60494 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2086996 28 100.0 32 ............................ GGCCTAAGCTCCGGCGGTATAGTATCTTGTAT 2086936 28 100.0 32 ............................ CCAAGCTTTGACAGATTCAGGGGTCTTGAGGA 2086876 28 100.0 32 ............................ TCGATAGACTCAGGGACTGTAAACTGAATGCC 2086816 28 100.0 32 ............................ TTCTTGGTGACAAGTCATTAGCTCGCGAATGG 2086756 28 100.0 32 ............................ TATTGACCTCATAGGTTGCTGTATCATTATTA 2086696 28 100.0 32 ............................ TATACGGCAGTTAACTATTATATCAGTCTTTT 2086636 28 100.0 32 ............................ TTGTGCGTCCACCAATAACACACTATTTTGTT 2086576 28 100.0 32 ............................ AGAATCTGGTGGTAAAGTGGGCAAGACTAACG 2086516 28 100.0 32 ............................ TACGCAAGTCTTCCTGTGTAAAAGTCTTATTG 2086456 28 100.0 32 ............................ AAACGGTCTTGCTTGGTCGCTCACATCAAACT 2086396 28 100.0 32 ............................ ATTGATGCAGCAGCAAGACATATTTCAGACCT 2086336 28 100.0 32 ............................ TTTTCGGCTACTTTTAAGGCTTCTTCTTGTTT 2086276 28 100.0 32 ............................ AAAAATGTGGACGCATAAGAGTTCTTTCTTGA 2086216 28 100.0 32 ............................ ACAGGAGCCTTATAGGTCTCATTTAGACTTAA 2086156 28 100.0 32 ............................ TTGTTGACAAGTTAAAAAAGACTGATATAATA 2086096 28 100.0 32 ............................ TGTGACACACTATGTCCAGACGTTTAATAAGC 2086036 28 100.0 32 ............................ AACATGGACGTTTACTGTCGGTCAGGGTTATA 2085976 28 100.0 32 ............................ TAAGGAGGTATCAGAAGATGAGCGCGGATAAC 2085916 28 100.0 32 ............................ TCTGAGCAGGTGCGCTATGTAAGGGTGTTAAT 2085856 28 100.0 32 ............................ ACTAGGAAACGTATCGGTCTTTGAGACTGAAT 2085796 28 100.0 32 ............................ AACTGATTACTAAAGAACAGTAAGTTAATTAC 2085736 28 100.0 32 ............................ GCAATGTATTTCTCGAACTGAAATATTCAGCA 2085676 28 100.0 32 ............................ ACTTTCGTCGTGTGCGTTGATGAACTCTACTA 2085616 28 100.0 32 ............................ TTTACGTCTATCAGTCGGTATTATGCGGTACA 2085556 28 100.0 32 ............................ AAGTGAGTGGGCTGGTTATTGTAAAGGTAACA 2085496 28 100.0 32 ............................ ACACCAAGTCAGCCATAAATGTTGCGGACTTA 2085436 28 100.0 32 ............................ TTTCATGATATCATCACCTTGTGGATTAAACG 2085376 28 100.0 32 ............................ TCTTGTTGTTTATATTATATCAGTCTTTTTAA 2085316 28 100.0 32 ............................ TCATTGAGAAGTCGCTTAGCGTTCGCTACGTC 2085256 28 100.0 32 ............................ ATGCACTCCGCTTTCATCGTGTGCGTTGATGA 2085196 28 100.0 33 ............................ ATACACTCCGCTTTCATCGTGTGCGTTGATGAA 2085135 28 100.0 32 ............................ TTGAGCGTCCACTAATAACACACTATTTTGTT 2085075 28 100.0 32 ............................ TGCGTGGAACTAATGAGATTGACAGTCGTAAG 2085015 28 100.0 32 ............................ TTTGTTGTTTATATTATATCAGTCTTTTAACT 2084955 28 100.0 32 ............................ TTTGTTGTTTATATTATATCAGTCTTTTTTAA 2084895 28 100.0 32 ............................ ACTTGATGAGATGCCAGAGCCTTTTAGACGCC 2084835 28 100.0 32 ............................ TCCAGTTAACTCAAAGTCATCTAGCAGTCATC 2084775 28 100.0 32 ............................ TTATGCCACTGTCGAAGCGTCCGAACATCAAT 2084715 28 100.0 32 ............................ TCCCTCCAAACAGCCTCGTCTAATTAAATTAT 2084655 28 100.0 32 ............................ AATAACACACTATTTTGTTCAAATTTTACCGC 2084595 28 100.0 32 ............................ CAAGATCGCTTTATTTCTAAGCTGCCTACACG 2084535 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 2084475 28 100.0 32 ............................ TGTTGGCAAAAAGCTTACAGAGGTCTTGATTA 2084415 28 100.0 32 ............................ TTCAGAGTTCACTAAGACGCGTTGGTTATTCT 2084355 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCAGACCTCATCCCT 2084295 28 100.0 32 ............................ ACTGTGGAACCGTCGATTCGATAGGTCGCCAC 2084235 28 100.0 32 ............................ AGAGAATGAAGCAGACGGACAAGTGGTAGGAC 2084175 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 2084115 28 100.0 33 ............................ AATAGTCATCGTTCATGATTGTTGACTTATTAG 2084054 28 100.0 32 ............................ AGATGAGTAACTAAAGGTTGACTTAATGTTGA 2083994 28 100.0 32 ............................ AAGAACTGGGAACTGAGCCGATTTACCAGAAC 2083934 28 100.0 32 ............................ AAACCAGTCCTACCACTTGTCCGTCTGCTTCA 2083874 28 100.0 32 ............................ ATTATCGAATACTTAACACAAGCCCGTGCTAA 2083814 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTGTTGTTAATC 2083754 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 2083694 28 100.0 32 ............................ CAGAGATTTTAAAATATCCAGAACAAGGTAAC 2083634 28 100.0 32 ............................ TACAACTTCTTCTTCACTTACATATTGTAAGA 2083574 28 100.0 32 ............................ GCTTGAACTAGAATACTCATAGGAGCACTTAT 2083514 28 100.0 32 ............................ TTCGCAATGAAAACGGGGAACTTTCAGAGAGC 2083454 28 100.0 32 ............................ ATACCGCCCACCCACAAGCGTACTTGAGTCTT 2083394 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 2083334 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2083274 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2083214 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2083154 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2083094 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2083034 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2082974 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 2082914 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 2082854 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2082794 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2082734 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2082674 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2082614 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2082554 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2082494 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 76 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //